CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-006037
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 NADH-quinone oxidoreductase subunit F 
Protein Synonyms/Alias
 NADH dehydrogenase I subunit F; NDH-1 subunit F; NUO6 
Gene Name
 nuoF 
Gene Synonyms/Alias
 b2284; JW2279 
Created Date
 July 27, 2013 
Organism
 Escherichia coli (strain K12) 
NCBI Taxa ID
 83333 
Lysine Modification
Position
Peptide
Type
References
21TWRLRDDKQPVWLDEacetylation[1]
40NGYEGARKALTGLSPacetylation[1]
55DEIVNQVKDAGLKGRacetylation[1, 2]
60QVKDAGLKGRGGAGFacetylation[1]
78LKWSLMPKDESMNIRacetylation[1]
200RRANPRSKPPFPATSacetylation[1]
257MGFSGRVKNPGLWELacetylation[1]
286GGMRDGLKFKAWQPGacetylation[1]
366DGLPWSVKILRALERacetylation[1]
413EPLQSAIKYFREEFEacetylation[1]
424EEFEAGIKQPFSNTHacetylation[1]
442GIQPNLLKERW****acetylation[1]
Reference
 [1] Acetyl-Phosphate Is a Critical Determinant of Lysine Acetylation in E. coli.
 Weinert BT, Iesmantavicius V, Wagner SA, Schölz C, Gummesson B, Beli P, Nyström T, Choudhary C.
 Mol Cell. 2013 Jul 25;51(2):265-72. [PMID: 23830618]
 [2] Comprehensive profiling of protein lysine acetylation in Escherichia coli.
 Zhang K, Zheng S, Yang JS, Chen Y, Cheng Z.
 J Proteome Res. 2013 Feb 1;12(2):844-51. [PMID: 23294111
Functional Description
 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. 
Sequence Annotation
 NP_BIND 61 70 NAD (By similarity).
 NP_BIND 174 221 FMN (By similarity).
 METAL 351 351 Iron-sulfur (4Fe-4S) (Potential).
 METAL 354 354 Iron-sulfur (4Fe-4S) (Potential).
 METAL 357 357 Iron-sulfur (4Fe-4S) (Potential).
 METAL 398 398 Iron-sulfur (4Fe-4S) (Potential).  
Keyword
 4Fe-4S; Complete proteome; Direct protein sequencing; Flavoprotein; FMN; Iron; Iron-sulfur; Metal-binding; NAD; Oxidoreductase; Quinone; Reference proteome; Ubiquinone. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 445 AA 
Protein Sequence
MKNIIRTPET HPLTWRLRDD KQPVWLDEYR SKNGYEGARK ALTGLSPDEI VNQVKDAGLK 60
GRGGAGFSTG LKWSLMPKDE SMNIRYLLCN ADEMEPGTYK DRLLMEQLPH LLVEGMLISA 120
FALKAYRGYI FLRGEYIEAA VNLRRAIAEA TEAGLLGKNI MGTGFDFELF VHTGAGRYIC 180
GEETALINSL EGRRANPRSK PPFPATSGAW GKPTCVNNVE TLCNVPAILA NGVEWYQNIS 240
KSKDAGTKLM GFSGRVKNPG LWELPFGTTA REILEDYAGG MRDGLKFKAW QPGGAGTDFL 300
TEAHLDLPME FESIGKAGSR LGTALAMAVD HEINMVSLVR NLEEFFARES CGWCTPCRDG 360
LPWSVKILRA LERGEGQPGD IETLEQLCRF LGPGKTFCAH APGAVEPLQS AIKYFREEFE 420
AGIKQPFSNT HLINGIQPNL LKERW 445 
Gene Ontology
 GO:0045272; C:plasma membrane respiratory chain complex I; IDA:EcoCyc.
 GO:0051539; F:4 iron, 4 sulfur cluster binding; IMP:EcoCyc.
 GO:0010181; F:FMN binding; ISS:EcoCyc.
 GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
 GO:0051287; F:NAD binding; IMP:EcoCyc.
 GO:0008137; F:NADH dehydrogenase (ubiquinone) activity; IEA:InterPro.
 GO:0048038; F:quinone binding; IEA:UniProtKB-KW.
 GO:0009060; P:aerobic respiration; IMP:EcoCyc. 
Interpro
 IPR001949; NADH-UbQ_OxRdtase_51kDa_CS.
 IPR019575; NADH-UbQ_OxRdtase_Fsu_4Fe4S-bd.
 IPR011537; NADH-UbQ_OxRdtase_suF.
 IPR011538; NADH_UbQ_OxRdtase_51kDa_su.
 IPR019554; Soluble_ligand-bd. 
Pfam
 PF01512; Complex1_51K
 PF10589; NADH_4Fe-4S
 PF10531; SLBB 
SMART
 SM00928; NADH_4Fe-4S 
PROSITE
 PS00644; COMPLEX1_51K_1
 PS00645; COMPLEX1_51K_2 
PRINTS