CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-023816
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Jerky protein homolog-like 
Protein Synonyms/Alias
 Human homolog of mouse jerky gene protein; HHMJG 
Gene Name
 JRKL 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
184DETGLFWKCLPSRISubiquitination[1]
286RSKGLQEKAVLLLDNubiquitination[1]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961
Functional Description
  
Sequence Annotation
 DOMAIN 1 52 HTH psq-type.
 DOMAIN 67 139 HTH CENPB-type.
 DOMAIN 168 385 DDE.
 DNA_BIND 28 48 H-T-H motif (By similarity).
 DNA_BIND 100 132 H-T-H motif (By similarity).  
Keyword
 Complete proteome; DNA-binding; Nucleus; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 524 AA 
Protein Sequence
MSGKRKRVVL TIKDKLDIIK KLEDGGSSKQ LAVIYGIGET TVRDIRKNKE KIITYASSSD 60
STSLLAKRKS MKPSMYEELD RAMLEWFNQQ RAKGNPISGP ICAKRAEFFF YALGMDGDFN 120
PSAGWLTRFK QRHSIREINI RNERLNGDET AVEDFCNNFR DFIERENLQP EQIYNADETG 180
LFWKCLPSRI SVIKGKCTVP GHKSIEERVT IMCCANATGL HKLKLCVVGK AKKPRSFKST 240
DTLNLPVSYF SQKGAWMDLS IFRQWFDKIF VPQVREYLRS KGLQEKAVLL LDNSPTHPNE 300
NVLRSDDGQI FAKYLPPNVA SLIQPSDQGV IATMKRNYRA GLLQNNLEEG NDLKSFWKKL 360
TLLDALYEIA MAWNLVKPVT ISRAWKKILP MVEEKESLDF DVEDISVATV AAILQHTKGL 420
ENVTTENLEK WLEVDSTEPG YEVLTDSEII RRAQGQADES SENEEEEIEL IPEKHINHAA 480
ALQWTENLLD YLEQQGDMIL PDRLVIRKLR ATIRNKQKMT KSSQ 524 
Gene Ontology
 GO:0005634; C:nucleus; TAS:ProtInc.
 GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
 GO:0007417; P:central nervous system development; TAS:ProtInc. 
Interpro
 IPR004875; DDE_SF_endonuclease_CENPB-like.
 IPR009057; Homeodomain-like.
 IPR006600; HTH_CenpB_DNA-bd_dom.
 IPR007889; HTH_Psq. 
Pfam
 PF04218; CENP-B_N
 PF03184; DDE_1
 PF03221; HTH_Tnp_Tc5 
SMART
 SM00674; CENPB 
PROSITE
 PS51253; HTH_CENPB
 PS50960; HTH_PSQ 
PRINTS