CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-006199
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Phosphoglycolate phosphatase 
Protein Synonyms/Alias
 PGP; PGPase 
Gene Name
 gph 
Gene Synonyms/Alias
 yhfE; b3385; JW3348 
Created Date
 July 27, 2013 
Organism
 Escherichia coli (strain K12) 
NCBI Taxa ID
 83333 
Lysine Modification
Position
Peptide
Type
References
78TQRKTMGKPPVDDDIacetylation[1]
136PLGLVTNKPTPFVAPacetylation[2]
Reference
 [1] Acetyl-Phosphate Is a Critical Determinant of Lysine Acetylation in E. coli.
 Weinert BT, Iesmantavicius V, Wagner SA, Schölz C, Gummesson B, Beli P, Nyström T, Choudhary C.
 Mol Cell. 2013 Jul 25;51(2):265-72. [PMID: 23830618]
 [2] Comprehensive profiling of protein lysine acetylation in Escherichia coli.
 Zhang K, Zheng S, Yang JS, Chen Y, Cheng Z.
 J Proteome Res. 2013 Feb 1;12(2):844-51. [PMID: 23294111
Functional Description
 Specifically catalyzes the dephosphorylation of 2- phosphoglycolate (2P-Gly). Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. 
Sequence Annotation
 REGION 13 15 Substrate (By similarity).
 ACT_SITE 13 13 Nucleophile (By similarity).
 METAL 13 13 Magnesium (By similarity).
 METAL 15 15 Magnesium (By similarity).
 METAL 192 192 Magnesium (By similarity).  
Keyword
 Carbohydrate metabolism; Chloride; Complete proteome; Hydrolase; Magnesium; Metal-binding; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 252 AA 
Protein Sequence
MNKFEDIRGV AFDLDGTLVD SAPGLAAAVD MALYALELPV AGEERVITWI GNGADVLMER 60
ALTWARQERA TQRKTMGKPP VDDDIPAEEQ VRILRKLFDR YYGEVAEEGT FLFPHVADTL 120
GALQAKGLPL GLVTNKPTPF VAPLLEALDI AKYFSVVIGG DDVQNKKPHP DPLLLVAERM 180
GIAPQQMLFV GDSRNDIQAA KAAGCPSVGL TYGYNYGEAI DLSQPDVIYQ SINDLLPALG 240
LPHSENQESK ND 252 
Gene Ontology
 GO:0031404; F:chloride ion binding; IDA:EcoCyc.
 GO:0000287; F:magnesium ion binding; IDA:EcoCyc.
 GO:0008967; F:phosphoglycolate phosphatase activity; IDA:EcoCyc.
 GO:0006281; P:DNA repair; IMP:EcoCyc.
 GO:0046295; P:glycolate biosynthetic process; IEA:UniProtKB-UniPathway.
 GO:0019253; P:reductive pentose-phosphate cycle; IEA:HAMAP. 
Interpro
 IPR023214; HAD-like_dom.
 IPR006439; HAD-SF_hydro_IA_v1.
 IPR006402; HAD-SF_hydro_IA_v3.
 IPR005833; Haloacid_DH/epoxide_hydro.
 IPR006346; PGP_bact.
 IPR023198; PGP_dom2. 
Pfam
 PF00702; Hydrolase 
SMART
  
PROSITE
  
PRINTS
 PR00413; HADHALOGNASE.