CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-021479
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Multivesicular body subunit 12B 
Protein Synonyms/Alias
 ESCRT-I complex subunit MVB12B; Protein FAM125B 
Gene Name
 MVB12B 
Gene Synonyms/Alias
 C9orf28; FAM125B 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
102CFTRSFSKENSHLGNubiquitination[1]
115GNVLVDMKLIDIKDTubiquitination[2, 3]
290KSLAEIEKEYEYSFRubiquitination[1]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [2] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [3] hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties.
 Chen Z, Zhou Y, Song J, Zhang Z.
 Biochim Biophys Acta. 2013 Aug;1834(8):1461-7. [PMID: 23603789
Functional Description
 Component of the ESCRT-I complex, a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies. 
Sequence Annotation
 DOMAIN 47 193 MABP.
 DOMAIN 254 303 UMA.
 MOD_RES 46 46 Phosphoserine.
 MOD_RES 101 101 Phosphoserine.
 MOD_RES 122 122 Phosphothreonine.
 MOD_RES 204 204 Phosphothreonine.
 MOD_RES 205 205 Phosphothreonine.
 MOD_RES 309 309 Phosphoserine.  
Keyword
 3D-structure; Alternative splicing; Complete proteome; Endosome; Membrane; Phosphoprotein; Protein transport; Reference proteome; Transport. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 319 AA 
Protein Sequence
MRSCFCVRRS RDPPPPQPPP PPPQRGTDQS TMPEVKDLSE ALPETSMDPI TGVGVVASRN 60
RAPTGYDVVA QTADGVDADL WKDGLFKSKV TRYLCFTRSF SKENSHLGNV LVDMKLIDIK 120
DTLPVGFIPI QETVDTQEVA FRKKRLCIKF IPRDSTEAAI CDIRIMGRTK QAPPQYTFIG 180
ELNSMGIWYR MGRVPRNHDS SQPTTPSQSS AASTPAPNLP RHISLTLPAT FRGRNSTRTD 240
YEYQHSNLYA ISAMDGVPFM ISEKFSCVPE SMQPFDLLGI TIKSLAEIEK EYEYSFRTEQ 300
SAAARLPPSP TRCQQIPQS 319 
Gene Ontology
 GO:0031902; C:late endosome membrane; IEA:UniProtKB-SubCell.
 GO:0015031; P:protein transport; IEA:UniProtKB-KW. 
Interpro
 IPR018798; FAM125.
 IPR023341; MABP.
 IPR023340; UMA. 
Pfam
 PF10240; DUF2464 
SMART
  
PROSITE
 PS51498; MABP
 PS51497; UMA 
PRINTS