CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-040820
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 E3 ubiquitin-protein ligase BRE1B 
Protein Synonyms/Alias
  
Gene Name
 RNF40 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
20GGSGPPEKKLSREEKacetylation[1, 2, 3]
50STEEMDLKVLQFKNKubiquitination[4]
112RGLLLATKNSHLRHIubiquitination[4]
149DTLAQVRKEYEMLRIubiquitination[4]
209EVQAEIGKLRAQASGacetylation[3]
480EKDDANFKLMSERIKubiquitination[5]
Reference
 [1] Proteomic investigations reveal a role for RNA processing factor THRAP3 in the DNA damage response.
 Beli P, Lukashchuk N, Wagner SA, Weinert BT, Olsen JV, Baskcomb L, Mann M, Jackson SP, Choudhary C.
 Mol Cell. 2012 Apr 27;46(2):212-25. [PMID: 22424773]
 [2] Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3.
 Sol EM, Wagner SA, Weinert BT, Kumar A, Kim HS, Deng CX, Choudhary C.
 PLoS One. 2012;7(12):e50545. [PMID: 23236377]
 [3] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302]
 [4] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [5] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Metal-binding; Reference proteome; Zinc; Zinc-finger. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 693 AA 
Protein Sequence
MSGPGNKRAA GDGGSGPPEK KLSREEKTTT TLIEPIRLGG ISSTEEMDLK VLQFKNKKLA 60
ERLEQRQACE DELRERIEKL EKRQAQFSLL YNESLQVKTQ LDEARGLLLA TKNSHLRHIE 120
HMESDELGLQ KKLRTEVIQL EDTLAQVRKE YEMLRIEFEQ NLAANEQAGP INREMRHLIS 180
SLQNHNHQLK GDAQRYKRKL REVQAEIGKL RAQASGSAHS TPNLGHPEDS GVSAPAPGKE 240
EGGPGPVSTP DNRKEMAPVP GTTTTTTSVK KEELVPSEED FQGITPGAQG PSSRGREPEA 300
RPKRELQERE GPSLGPPPVA SALSRADREK AKVEETKRKE SELLKGLRAE LKKAQESQKE 360
MKLLLDMYKS APKEQRDKVQ LMAAERKAKA EVDELRSRIR ELEERDRRES KKIADEDALR 420
RIRQAEEQIE HLQRKLGATK QEEEALLSEM DVTGQAFEDM QEQNGRLLQQ LREKDDANFK 480
LMSERIKANQ IHKLLREEKD ELGEQVLGLK SQVDAQLLTV QKLEEKERAL QGSLGGVEKE 540
LTLRSQALEL NKRKAVEAAQ LAEDLKVQLE HVQTRLREIQ PCLAESRAAR EKESFNLKRA 600
QEDISRLRRK LEKQRKVEVY ADADEILQEE IKEYKARLTC PCCNTRKKDA VLTKCFHVFC 660
FECVRGRYEA RQRKCPKCNA AFGAHDFHRI YIS 693 
Gene Ontology
 GO:0008270; F:zinc ion binding; IEA:InterPro. 
Interpro
 IPR001841; Znf_RING.
 IPR013083; Znf_RING/FYVE/PHD.
 IPR017907; Znf_RING_CS. 
Pfam
  
SMART
 SM00184; RING 
PROSITE
 PS00518; ZF_RING_1
 PS50089; ZF_RING_2 
PRINTS