CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-010602
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Malate dehydrogenase, cytoplasmic 1 
Protein Synonyms/Alias
  
Gene Name
 At1g04410; F19P19.13 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Arabidopsis thaliana (Mouse-ear cress) 
NCBI Taxa ID
 3702 
Lysine Modification
Position
Peptide
Type
References
3*****MAKEPVRVLVacetylation[1]
Reference
 [1] Proteins of diverse function and subcellular location are lysine acetylated in Arabidopsis.
 Finkemeier I, Laxa M, Miguet L, Howden AJ, Sweetlove LJ.
 Plant Physiol. 2011 Apr;155(4):1779-90. [PMID: 21311031
Functional Description
  
Sequence Annotation
 NP_BIND 12 18 NAD (By similarity).
 NP_BIND 130 132 NAD (By similarity).
 ACT_SITE 188 188 Proton acceptor (By similarity).
 BINDING 93 93 Substrate (By similarity).
 BINDING 99 99 Substrate (By similarity).
 BINDING 106 106 NAD (By similarity).
 BINDING 113 113 NAD (By similarity).
 BINDING 132 132 Substrate (By similarity).
 BINDING 163 163 Substrate (By similarity).
 MOD_RES 204 204 Phosphoserine.
 MOD_RES 205 205 Phosphoserine.
 CROSSLNK 119 119 Glycyl lysine isopeptide (Lys-Gly)  
Keyword
 Complete proteome; Cytoplasm; Isopeptide bond; NAD; Oxidoreductase; Phosphoprotein; Reference proteome; Tricarboxylic acid cycle; Ubl conjugation. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 332 AA 
Protein Sequence
MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPPAAEA LNGVKMELID 60
AAFPLLKGVV ATTDAVEGCT GVNVAVMVGG FPRKEGMERK DVMSKNVSIY KSQAAALEKH 120
AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNISCLTRLD HNRALGQISE RLSVPVSDVK 180
NVIIWGNHSS SQYPDVNHAK VQTSSGEKPV RELVKDDAWL DGEFISTVQQ RGAAIIKARK 240
LSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYSV PSGLIYSFPV TCRNGDWSIV 300
QGLPIDEVSR KKMDLTAEEL KEEKDLAYSC LS 332 
Gene Ontology
 GO:0048046; C:apoplast; IDA:TAIR.
 GO:0009570; C:chloroplast stroma; IDA:TAIR.
 GO:0005634; C:nucleus; IDA:TAIR.
 GO:0005886; C:plasma membrane; IDA:TAIR.
 GO:0009506; C:plasmodesma; IDA:TAIR.
 GO:0005774; C:vacuolar membrane; IDA:TAIR.
 GO:0030060; F:L-malate dehydrogenase activity; IEA:EC.
 GO:0044262; P:cellular carbohydrate metabolic process; IEA:InterPro.
 GO:0006108; P:malate metabolic process; IEA:InterPro.
 GO:0046686; P:response to cadmium ion; IEP:TAIR.
 GO:0009651; P:response to salt stress; IEP:TAIR.
 GO:0010043; P:response to zinc ion; IEP:TAIR.
 GO:0006099; P:tricarboxylic acid cycle; IEA:UniProtKB-KW. 
Interpro
 IPR001557; L-lactate/malate_DH.
 IPR022383; Lactate/malate_DH_C.
 IPR001236; Lactate/malate_DH_N.
 IPR015955; Lactate_DH/Glyco_Ohase_4_C.
 IPR001252; Malate_DH_AS.
 IPR011274; Malate_DH_NAD-dep_euk.
 IPR010945; Malate_DH_type2.
 IPR016040; NAD(P)-bd_dom. 
Pfam
 PF02866; Ldh_1_C
 PF00056; Ldh_1_N 
SMART
  
PROSITE
 PS00068; MDH 
PRINTS