CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-000575
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Phytanoyl-CoA dioxygenase, peroxisomal 
Protein Synonyms/Alias
 Lupus nephritis-associated peptide 1; Phytanic acid oxidase; Phytanoyl-CoA alpha-hydroxylase; PhyH 
Gene Name
 Phyh 
Gene Synonyms/Alias
 Ln1; Lnap1; Pahx 
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
59VLTLEQRKFYEENGFacetylation[1]
59VLTLEQRKFYEENGFsuccinylation[1]
59VLTLEQRKFYEENGFubiquitination[2]
108MRDVALAKQDYMPSDacetylation[1]
108MRDVALAKQDYMPSDsuccinylation[1]
108MRDVALAKQDYMPSDubiquitination[2]
120PSDRMVSKIQDFQEDubiquitination[2]
218GTHKGTLKPHDYPKWacetylation[3]
224LKPHDYPKWEGGVNKubiquitination[2]
231KWEGGVNKMYHGIQDacetylation[1]
231KWEGGVNKMYHGIQDsuccinylation[1]
231KWEGGVNKMYHGIQDubiquitination[2]
252RVHLVMEKGDTVFFHacetylation[1]
252RVHLVMEKGDTVFFHsuccinylation[1]
311VVEMAEKKYGFQGVMacetylation[1]
311VVEMAEKKYGFQGVMsuccinylation[1]
Reference
 [1] SIRT5-Mediated Lysine Desuccinylation Impacts Diverse Metabolic Pathways.
 Park J, Chen Y, Tishkoff DX, Peng C, Tan M, Dai L, Xie Z, Zhang Y, Zwaans BM, Skinner ME, Lombard DB, Zhao Y.
 Mol Cell. 2013 Jun 27;50(6):919-30. [PMID: 23806337]
 [2] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023]
 [3] Quantification of mitochondrial acetylation dynamics highlights prominent sites of metabolic regulation.
 Still AJ, Floyd BJ, Hebert AS, Bingman CA, Carson JJ, Gunderson DR, Dolan BK, Grimsrud PA, Dittenhafer-Reed KE, Stapleton DS, Keller MP, Westphall MS, Denu JM, Attie AD, Coon JJ, Pagliarini DJ.
 J Biol Chem. 2013 Jul 17;. [PMID: 23864654
Functional Description
 Converts phytanoyl-CoA to 2-hydroxyphytanoyl-CoA. 
Sequence Annotation
 REGION 175 177 Alpha-ketoglutarate binding (By
 METAL 175 175 Iron (By similarity).
 METAL 177 177 Iron (By similarity).
 METAL 264 264 Iron (By similarity).
 BINDING 120 120 Alpha-ketoglutarate (By similarity).
 BINDING 157 157 Alpha-ketoglutarate (By similarity).
 BINDING 193 193 Alpha-ketoglutarate (By similarity).
 BINDING 266 266 Alpha-ketoglutarate (By similarity).
 BINDING 275 275 Alpha-ketoglutarate (By similarity).  
Keyword
 Complete proteome; Dioxygenase; Iron; Metal-binding; Oxidoreductase; Peroxisome; Reference proteome; Transit peptide; Vitamin C. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 338 AA 
Protein Sequence
MNLTRAGARL QVLLGHLGRP SAPTIVAQPV SGLASPASFQ PEQFQYTLDN NVLTLEQRKF 60
YEENGFLVIK NLVSDDDIQR FRAEFERICR EEVKPPGIVI MRDVALAKQD YMPSDRMVSK 120
IQDFQEDEEL FRYCLLPEIL KYVECFTGPN IMALHGMLIN KPPDVGKKTS RHPLHQDLHY 180
FPFRPSNLIV CAWTAMEHID RNNGCLVVLP GTHKGTLKPH DYPKWEGGVN KMYHGIQDYD 240
PNSPRVHLVM EKGDTVFFHP LLIHGSGRNK TQGFRKAISC HFGSSDCQCI DVSGTSQENI 300
AREVVEMAEK KYGFQGVMDF KDTWIFRSRL VKGERINI 338 
Gene Ontology
 GO:0005739; C:mitochondrion; IDA:MGI.
 GO:0005777; C:peroxisome; TAS:MGI.
 GO:0003824; F:catalytic activity; IDA:MGI.
 GO:0048037; F:cofactor binding; IEA:Compara.
 GO:0031418; F:L-ascorbic acid binding; IEA:UniProtKB-KW.
 GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
 GO:0016702; F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen; IEA:UniProtKB-KW.
 GO:0048244; F:phytanoyl-CoA dioxygenase activity; IEA:EC.
 GO:0001561; P:fatty acid alpha-oxidation; IDA:MGI.
 GO:0006720; P:isoprenoid metabolic process; IEA:Compara.
 GO:0097089; P:methyl-branched fatty acid metabolic process; IEA:Compara. 
Interpro
 IPR008775; Phytyl_CoA_dOase. 
Pfam
 PF05721; PhyH 
SMART
  
PROSITE
  
PRINTS