CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-025684
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Nucleoporin 54kDa variant 
Protein Synonyms/Alias
  
Gene Name
  
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
429LNAPTQFKGRLNELMubiquitination[1, 2]
Reference
 [1] Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass.
 Povlsen LK, Beli P, Wagner SA, Poulsen SL, Sylvestersen KB, Poulsen JW, Nielsen ML, Bekker-Jensen S, Mailand N, Choudhary C.
 Nat Cell Biol. 2012 Oct;14(10):1089-98. [PMID: 23000965]
 [2] hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties.
 Chen Z, Zhou Y, Song J, Zhang Z.
 Biochim Biophys Acta. 2013 Aug;1834(8):1461-7. [PMID: 23603789] 
Functional Description
  
Sequence Annotation
  
Keyword
  
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 508 AA 
Protein Sequence
MAFNFGAPSG TSGTAAATAA PAGGFGGFGT TSTTAGSAFS FSAPTNTGTT GLFGGTQNKG 60
FGFGTGFGTT TGTSTGLGTG LGTGLGFGGF NTQQQQQQTT LGGLFSQPTQ APTQSNQLIN 120
TASALSAPTL LGDERDAILA KWNQLQAFWG TGKGYFNNNI PPVEFTQENP FCRFKAVGYS 180
CMPSNKDEDG LVVLVFNKKE TEIRSQQQQL VESLHKVLGG NQTLTVNVEG TKTLPDDQTE 240
VVIYVVERSP NGTSRRVPAT TLYAHFEQAN IKTQLQQLGV TLSMTRTELS PAQIKQLLQN 300
PPAGVDPIIW EQAKVDNPDS EKLIPVPMVG FKELLRRLKV QDQMTKQHQT RLDIISEDIS 360
ELQKNQTTSV AKIAQYKRKL MDLSHRTLQV LIKQEIQRKS GYAIQADEEQ LRVQLDTIQG 420
ELNAPTQFKG RLNELMSQIR MQNHFGAVRS EERYYIDADL LREIKQHLKQ QQEGLSHLIS 480
IIKDDLEDIK LVEHGLNETI HIRGGVFS 508 
Gene Ontology
 GO:0005643; C:nuclear pore; IEA:Compara.
 GO:0005487; F:nucleocytoplasmic transporter activity; IEA:Compara.
 GO:0006605; P:protein targeting; IEA:Compara. 
Interpro
 IPR024864; Nup54/Nup57/Nup44.
 IPR025712; Nup54_alpha-helical_dom. 
Pfam
 PF13874; Nup54 
SMART
  
PROSITE
  
PRINTS