CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-012784
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Cell adhesion molecule 3 
Protein Synonyms/Alias
 Immunoglobulin superfamily member 4B; IgSF4B; Nectin-like protein 1; NECL-1 
Gene Name
 Cadm3 
Gene Synonyms/Alias
 Igsf4b; Necl1 
Created Date
 July 27, 2013 
Organism
 Rattus norvegicus (Rat) 
NCBI Taxa ID
 10116 
Lysine Modification
Position
Peptide
Type
References
130TVLGIPQKPIITGYKacetylation[1]
391GQSGGDDKKEYFI**ubiquitination[2]
Reference
 [1] Proteomic analysis of lysine acetylation sites in rat tissues reveals organ specificity and subcellular patterns.
 Lundby A, Lage K, Weinert BT, Bekker-Jensen DB, Secher A, Skovgaard T, Kelstrup CD, Dmytriyev A, Choudhary C, Lundby C, Olsen JV.
 Cell Rep. 2012 Aug 30;2(2):419-31. [PMID: 22902405]
 [2] Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis.
 Na CH, Jones DR, Yang Y, Wang X, Xu Y, Peng J.
 J Proteome Res. 2012 Sep 7;11(9):4722-32. [PMID: 22871113
Functional Description
 Involved in the cell-cell adhesion. Has both calcium- independent homophilic cell-cell adhesion activity and calcium- independent heterophilic cell-cell adhesion activity with IGSF4, PVRL1 and PVRL3. Interaction with EPB41L1 may regulate structure or function of cell-cell junctions (By similarity). 
Sequence Annotation
 DOMAIN 23 124 Ig-like V-type.
 DOMAIN 128 226 Ig-like C2-type 1.
 DOMAIN 231 313 Ig-like C2-type 2.
 CARBOHYD 288 288 N-linked (GlcNAc...) (Potential).
 DISULFID 48 108 By similarity.
 DISULFID 150 207 By similarity.
 DISULFID 252 297 By similarity.  
Keyword
 Calcium; Cell adhesion; Cell junction; Cell membrane; Complete proteome; Disulfide bond; Glycoprotein; Immunoglobulin domain; Membrane; Reference proteome; Repeat; Signal; Transmembrane; Transmembrane helix. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 396 AA 
Protein Sequence
MGAPSALPLL LLLACSWAPG GANLSQDDSQ PWTSDETVVA GGTVVLKCQV KDHEDSSLQW 60
SNPAQQTLYF GEKRALRDNR IQLVSSTPHE LSISISNVAL ADEGEYTCSI FTMPVRTAKS 120
LVTVLGIPQK PIITGYKSSL REKETATLNC QSSGSKPAAQ LAWRKGDQEL HGDQTRIQED 180
PNGKTFTVSS SVSFQVTRDD DGANVVCSVN HESLKGADRS TSQRIEVLYT PTAMIRPEPA 240
HPREGQKLLL HCEGRGNPVP QQYVWVKEGS EPPLKMTQES ALIFPFLNKS DSGTYGCTAT 300
SNMGSYTAYF TLNVNDPSPV PSSSSTYHAI IGGIVAFIVF LLLILLIFLG HYLIRHKGTY 360
LTHEAKGSDD APDADTAIIN AEGGQSGGDD KKEYFI 396 
Gene Ontology
 GO:0005911; C:cell-cell junction; IEA:Compara.
 GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
 GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
 GO:0007157; P:heterophilic cell-cell adhesion; IEA:Compara.
 GO:0007156; P:homophilic cell adhesion; IEA:Compara.
 GO:0008104; P:protein localization; IEA:Compara. 
Interpro
 IPR013162; CD80_C2-set.
 IPR007110; Ig-like_dom.
 IPR013783; Ig-like_fold.
 IPR003599; Ig_sub.
 IPR003598; Ig_sub2.
 IPR013106; Ig_V-set.
 IPR003585; Neurexin-like. 
Pfam
 PF08205; C2-set_2
 PF07686; V-set 
SMART
 SM00294; 4.1m
 SM00409; IG
 SM00408; IGc2 
PROSITE
 PS50835; IG_LIKE 
PRINTS