CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-005081
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Nucleoside diphosphate kinase B 
Protein Synonyms/Alias
 NDK B; NDP kinase B; C-myc purine-binding transcription factor PUF; Histidine protein kinase NDKB; nm23-H2 
Gene Name
 NME2 
Gene Synonyms/Alias
 NM23B 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
12ERTFIAIKPDGVQRGubiquitination[1]
26GLVGEIIKRFEQKGFubiquitination[1]
39GFRLVGLKFMQASEDubiquitination[1]
49QASEDLLKEHYVDLKubiquitination[1]
56KEHYVDLKDRPFFAGubiquitination[1]
85WEGLNVVKTGRVMLGubiquitination[1]
100ETNPADSKPGTIRGDubiquitination[1]
164RASEEHLKQHYIDLKubiquitination[1]
171KQHYIDLKDRPFFPGubiquitination[1]
200WEGLNVVKTGRVMLGubiquitination[1]
239IHGSDSVKSAEKEISubiquitination[1]
243DSVKSAEKEISLWFKubiquitination[1]
250KEISLWFKPEELVDYubiquitination[1]
Reference
 [1] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661
Functional Description
 Major role in the synthesis of nucleoside triphosphates other than ATP. Negatively regulates Rho activity by interacting with AKAP13/LBC. Acts as a transcriptional activator of the MYC gene; binds DNA non-specifically (PubMed:8392752). Exhibits histidine protein kinase activity. 
Sequence Annotation
 REGION 2 66 Interaction with AKAP13.
 ACT_SITE 118 118 Pros-phosphohistidine intermediate.
 BINDING 12 12 ATP.
 BINDING 60 60 ATP.
 BINDING 88 88 ATP.
 BINDING 94 94 ATP.
 BINDING 105 105 ATP.
 BINDING 115 115 ATP.
 MOD_RES 2 2 N-acetylalanine.
 MOD_RES 94 94 Phosphothreonine (By similarity).
 MOD_RES 128 128 N6-acetyllysine.  
Keyword
 3D-structure; Acetylation; Activator; Alternative splicing; ATP-binding; Cell projection; Complete proteome; Cytoplasm; Direct protein sequencing; DNA-binding; Kinase; Magnesium; Metal-binding; Nucleotide metabolism; Nucleotide-binding; Nucleus; Phosphoprotein; Reference proteome; Transcription; Transcription regulation; Transferase. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 152 AA 
Protein Sequence
MANCERTFIA IKPDGVQRGL VGEIIKRFEQ KGFRLVGLKF MQASEDLLKE HYVDLKDRPF 60
FAGLVKYMHS GPVVAMVWEG LNVVKTGRVM LGETNPADSK PGTIRGDFCI QVGRTMANLE 120
RTFIAIKPDG VQRGLVGEII KRFEQKGFRL VAMKFLRASE EHLKQHYIDL KDRPFFPGLV 180
KYMNSGPVVA MVWEGLNVVK TGRVMLGETN PADSKPGTIR GDFCIQVGRN IIHGSDSVKS 240
AEKEISLWFK PEELVDYKSC AHDWVYE 267 
Gene Ontology
 GO:0071944; C:cell periphery; IDA:UniProtKB.
 GO:0005829; C:cytosol; TAS:Reactome.
 GO:0030027; C:lamellipodium; IDA:HGNC.
 GO:0005634; C:nucleus; NAS:UniProtKB.
 GO:0001726; C:ruffle; IDA:HGNC.
 GO:0005524; F:ATP binding; NAS:UniProtKB.
 GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
 GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
 GO:0004550; F:nucleoside diphosphate kinase activity; IDA:UniProtKB.
 GO:0004673; F:protein histidine kinase activity; IEA:EC.
 GO:0003700; F:sequence-specific DNA binding transcription factor activity; TAS:UniProtKB.
 GO:0007155; P:cell adhesion; TAS:HGNC.
 GO:0006241; P:CTP biosynthetic process; IEA:InterPro.
 GO:0006183; P:GTP biosynthetic process; IEA:InterPro.
 GO:0007229; P:integrin-mediated signaling pathway; IDA:UniProtKB.
 GO:0043066; P:negative regulation of apoptotic process; IMP:HGNC.
 GO:0015949; P:nucleobase-containing small molecule interconversion; TAS:Reactome.
 GO:0009142; P:nucleoside triphosphate biosynthetic process; IDA:UniProtKB.
 GO:0050679; P:positive regulation of epithelial cell proliferation; IMP:HGNC.
 GO:0045618; P:positive regulation of keratinocyte differentiation; IMP:HGNC.
 GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:UniProtKB.
 GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
 GO:0006228; P:UTP biosynthetic process; IEA:InterPro. 
Interpro
 IPR001564; Nucleoside_diP_kinase.
 IPR023005; Nucleoside_diP_kinase_AS. 
Pfam
 PF00334; NDK 
SMART
 SM00562; NDK 
PROSITE
 PS00469; NDP_KINASES 
PRINTS
 PR01243; NUCDPKINASE.