CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-015985
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Cytoplasmic tRNA 2-thiolation protein 1 
Protein Synonyms/Alias
 ATP-binding domain-containing protein 3; Cancer-associated gene protein; Cytoplasmic tRNA adenylyltransferase 1 
Gene Name
 CTU1 
Gene Synonyms/Alias
 ATPBD3; NCS6 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
319RPRLAIGKGRRGLDEubiquitination[1]
343PARPPASKAVPTF**ubiquitination[1, 2]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [2] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983
Functional Description
 Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position. 
Sequence Annotation
 MOD_RES 200 200 Phosphoserine.  
Keyword
 Complete proteome; Cytoplasm; Phosphoprotein; Polymorphism; Reference proteome; RNA-binding; Transferase; tRNA processing; tRNA-binding. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 348 AA 
Protein Sequence
MPAPPCASCH AARAALRRPL SGQALCGACF CAAFEAEVLH TVLAGRLLPP GAVVAVGASG 60
GKDSTVLAHV LRALAPRLGI SLQLVAVDEG IGGYRDAALA AVRRQAARWE LPLTVVAYED 120
LFGGWTMDAV ARSTAGSGRS RSCCTFCGVL RRRALEEGAR RVGATHIVTG HNADDMAETV 180
LMNFLRGDAG RLARGGGLGS PGEGGALPRC RPLQFASQKE VVLYAHFRRL DYFSEECVYA 240
PEAFRGHARD LLKRLEAARP SAVLDLVHSA ERLALAPAAR PPRPGACSRC GALASRALCQ 300
ACALLDGLNR GRPRLAIGKG RRGLDEEATP GTPGDPARPP ASKAVPTF 348 
Gene Ontology
 GO:0005829; C:cytosol; ISS:UniProtKB.
 GO:0005739; C:mitochondrion; IEA:Compara.
 GO:0005524; F:ATP binding; IEA:InterPro.
 GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
 GO:0000049; F:tRNA binding; IEA:UniProtKB-KW.
 GO:0034227; P:tRNA thio-modification; NAS:UniProtKB.
 GO:0002098; P:tRNA wobble uridine modification; NAS:UniProtKB. 
Interpro
 IPR012089; 2-thiocytidine_tRNA_synth_TtcA.
 IPR014729; Rossmann-like_a/b/a_fold.
 IPR011063; tRNA-lysidine/thiocyt_synth. 
Pfam
 PF01171; ATP_bind_3 
SMART
  
PROSITE
 PS01263; UPF0021 
PRINTS