CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-039839
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 Lysine-specific demethylase 3B 
Protein Synonyms/Alias
  
Gene Name
 KDM3B 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
113EEVFSWLKCAKGQSHubiquitination[1]
153ARGKWGIKANCPCISubiquitination[1, 2]
225IRSEEPLKTDSSASNubiquitination[3]
281SLRSVLNKESHSPFGubiquitination[1, 4]
297DSFNSTAKVSPLTPKubiquitination[1, 2]
304KVSPLTPKLFNSLLLubiquitination[4]
319GPTASNNKTEGSSLRubiquitination[1, 3]
335LLHSGPGKLPQTPLDubiquitination[1, 3]
359STSSAGVKSKASLPNubiquitination[2, 3]
379IASVVENKKTSDASKubiquitination[1]
380ASVVENKKTSDASKRubiquitination[1]
396CNLTDTQKEVKEMVMubiquitination[1]
435PSNKNNWKIFRECWKubiquitination[1]
455LVSGVHKKLKSELWKubiquitination[1]
457SGVHKKLKSELWKPEubiquitination[1]
490CAIISDVKVRDFWDGubiquitination[1]
503DGFEIICKRLRSEDGubiquitination[1]
516DGQPMVLKLKDWPPGubiquitination[1]
548LPLPEYTKRDGRLNLubiquitination[1, 3, 5]
632GDADEVTKQRIHDGKubiquitination[1, 3]
639KQRIHDGKEKPGALWubiquitination[1]
652LWHIYAAKDAEKIREubiquitination[1]
663KIRELLRKVGEEQGQubiquitination[1]
743FVSPEHVKHCFRLTQubiquitination[1]
765THTNHEDKLQVKNIIubiquitination[1]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [2] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302]
 [3] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [4] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [5] Global identification of modular cullin-RING ligase substrates.
 Emanuele MJ, Elia AE, Xu Q, Thoma CR, Izhar L, Leng Y, Guo A, Chen YN, Rush J, Hsu PW, Yen HC, Elledge SJ.
 Cell. 2011 Oct 14;147(2):459-74. [PMID: 21963094
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 793 AA 
Protein Sequence
MNLWIPSSSL AEGIDLETSK YILANVGDQF CQLVMSEKEA MMMVEPHQKV AWKRAVRGVR 60
EMCDVCETTL FNIHWVCRKC GFGVCLDCYR LRKSRPRSET EEMGDEEVFS WLKCAKGQSH 120
EPENLMPTQI IPGTALYNIG DMVHAARGKW GIKANCPCIS RQNKSVLRPA VTNGMSQLPS 180
INPSASSGNE TTFSGGGGPA PVTTPEPDHV PKADSTDIRS EEPLKTDSSA SNSNSELKAI 240
RPPCPDTAPP SSALHWLADL ATQKAKEETK EAGSLRSVLN KESHSPFGLD SFNSTAKVSP 300
LTPKLFNSLL LGPTASNNKT EGSSLRDLLH SGPGKLPQTP LDTGIPFPPV FSTSSAGVKS 360
KASLPNFLDH IIASVVENKK TSDASKRACN LTDTQKEVKE MVMGLNVLDP HTSHSWLCDG 420
RLLCLHDPSN KNNWKIFREC WKQGQPVLVS GVHKKLKSEL WKPEAFSQEF GDQDVDLVNC 480
RNCAIISDVK VRDFWDGFEI ICKRLRSEDG QPMVLKLKDW PPGEDFRDMM PTRFEDLMEN 540
LPLPEYTKRD GRLNLASRLP SYFVRPDLGP KMYNAYGLIT AEDRRVGTTN LHLDVSDAVN 600
VMVYVGIPIG EGAHDEEVLK TIDEGDADEV TKQRIHDGKE KPGALWHIYA AKDAEKIREL 660
LRKVGEEQGQ ENPPDHDPIH DQSWYLDQTL RKRLYEEYGV QGWAIVQFLG DAVFIPAGAP 720
HQVHNLYSCI KVAEDFVSPE HVKHCFRLTQ EFRHLSNTHT NHEDKLQVKN IIYHAVKDAV 780
GTLKAHESKL ARS 793 
Gene Ontology
  
Interpro
 IPR003347; JmjC_dom. 
Pfam
 PF02373; JmjC 
SMART
 SM00558; JmjC 
PROSITE
 PS51184; JMJC 
PRINTS