CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-016641
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Retinoblastoma-binding protein 5 
Protein Synonyms/Alias
 RBBP-5 
Gene Name
 Rbbp5 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
244GEPEPMQKLQDLVNRubiquitination[1]
Reference
 [1] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023
Functional Description
 As part of the MLL1/MLL complex, involved in mono-, di- and trimethylation at 'Lys-4' of histone H3. Histone H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. In embryonic stem (ES) cells, plays a crucial role in the differentiation potential, particularly along the neural lineage, regulating gene induction and H3 'Lys-4' methylation at key developmental loci, including that mediated by retinoic acid. Does not affect ES cell self-renewal. 
Sequence Annotation
 REPEAT 22 63 WD 1.
 REPEAT 64 103 WD 2.
 REPEAT 148 188 WD 3.
 REPEAT 196 235 WD 4.
 REPEAT 249 291 WD 5.
 REPEAT 293 331 WD 6.
 MOD_RES 252 252 Phosphothreonine; by CDK1 (By
 MOD_RES 350 350 Phosphoserine (By similarity).
 MOD_RES 388 388 Phosphoserine (By similarity).
 MOD_RES 389 389 Phosphoserine (By similarity).
 MOD_RES 497 497 Phosphoserine; by CDK1 (By similarity).
 MOD_RES 525 525 Phosphoserine (By similarity).  
Keyword
 3D-structure; Alternative splicing; Chromatin regulator; Complete proteome; Nucleus; Phosphoprotein; Reference proteome; Repeat; Transcription; Transcription regulation; WD repeat. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 538 AA 
Protein Sequence
MNLELLESFG QNYPEEADGT LDCISMALTC TFNRWGTLLA VGCNDGRIVI WDFLTRGIAK 60
IISAHIHPVC SLCWSRDGHK LVSASTDNIV SQWDVLSGDC DQRFRFPSPI LKVQYHPRDQ 120
NKVLVCPMKS APVMLTLSDS KHVVLPVDDD SDLNVVASFD RRGEYIYTGN AKGKILVLKT 180
DSQDLVASFR VTTGTSNTTA IKSIEFARKG SCFLINTADR IIRVYDGREI LTCGRDGEPE 240
PMQKLQDLVN RTPWKKCCFS GDGEYIVAGS ARQHALYIWE KSIGNLVKIL HGTRGELLLD 300
VAWHPVRPII ASISSGVVSI WAQNQVENWS AFAPDFKELD ENVEYEERES EFDIEDEDKS 360
EPEQTGADAA EDEEVDVTSV DPIAAFCSSD EELEDSKALL YLPIAPEVED PEENPYGPPP 420
DAVPSSLMDE GASSEKKRQS SADGSQPPKK KPKTTNIELQ GVPNDEVHPL LGVKGDGKSK 480
KKQAGRPKGS KGKEKDSPFK PKLYKGDRGL PLEGSTKGKV QAELSQSLAA GGAISELL 538 
Gene Ontology
 GO:0071339; C:MLL1 complex; ISS:UniProtKB.
 GO:0048188; C:Set1C/COMPASS complex; ISS:UniProtKB.
 GO:0042800; F:histone methyltransferase activity (H3-K4 specific); IEA:Compara.
 GO:0044212; F:transcription regulatory region DNA binding; IEA:Compara.
 GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.
 GO:0006974; P:response to DNA damage stimulus; ISO:MGI.
 GO:0043627; P:response to estrogen stimulus; IEA:Compara.
 GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. 
Interpro
 IPR015943; WD40/YVTN_repeat-like_dom.
 IPR001680; WD40_repeat.
 IPR017986; WD40_repeat_dom. 
Pfam
 PF00400; WD40 
SMART
 SM00320; WD40 
PROSITE
 PS00678; WD_REPEATS_1
 PS50082; WD_REPEATS_2
 PS50294; WD_REPEATS_REGION 
PRINTS