CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-040703
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 RANBP2-like and GRIP domain-containing protein 1 
Protein Synonyms/Alias
  
Gene Name
 RGPD1 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
763SEGGPLYKNGSLRNAubiquitination[1]
818KMICQEVKAITKLNSubiquitination[1]
928EPGNQEKKSEKPLENubiquitination[1]
931NQEKKSEKPLENDTGubiquitination[1]
980GEGFQFGKKDPNFKGubiquitination[1]
994GFSGAGEKLFSSQCGubiquitination[1]
1002LFSSQCGKMANKANTubiquitination[1]
1070DAEISQWKERGLGNLubiquitination[1]
1081LGNLKILKNEVNGKPubiquitination[1]
1087LKNEVNGKPRMLMRRubiquitination[1]
1135DFSDGDAKLERLAAQubiquitination[1]
1144ERLAAQFKTPELAEEubiquitination[1, 2]
1207FLTNDQTKVTEEENKubiquitination[3]
1383ILQNYDNKQVRIVMRubiquitination[1]
1588AQSGSESKVEPKKCEubiquitination[3]
1611QSSDSKVKNLSASFPubiquitination[1]
1656QKLSSTTKSADQLNGubiquitination[1]
1739LSPEEKGKLAAVAQGubiquitination[1]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [2] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302]
 [3] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome; TPR repeat. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 1756 AA 
Protein Sequence
MRRSKAYGER YLASVQGSAP SPGKKLRGFY FAKLYYEAKE YDLAKKYVCT YLSVQERDPR 60
AHRFLGLLYE LEENTEKAVE CYRRSLELNP PQKDLVLKIA ELLCKNDVTD GRAKYWVERA 120
AKLFPGSPAI YKLKEHLLDC EGEDGWNKLF DWIQSELYVR PDDVHMNIRL VELYRSNKRL 180
KDAVARCHEA ERNIALRSSL EWNSCVVQTL KEYLESLQCL ESDKSDWRAT NTDLLLAYAN 240
LMLLTLSTRD VQESRELLES FDSALQSAKS SLGGNDELSA TFLEMKGHFY MHAGSLLLKM 300
GQHGNNVQWQ ALSELAALCY VIAFQVPRPK IKLIKGEAGQ NLLEMMACDR LSQSGHMLLN 360
LSRGKQDFLK EVVETFANKS GQSVLYNALF SSQSSKDTSF LGSDDIGNID VQEPELEDLA 420
RYDVGAIQAH NGSLQHLTWL GLQWNSLPAL PGIRKWLKQL FHHLPQETSR LETNAPESIC 480
ILDLEVFLLG VVYTSHLQLK EKCNSHHSSY QPLCLPLPVC KRLCTERQKS WWDAVCTLIH 540
RKAVPGNSAE LRLVVQHEIN TLRAQEKHGL QPALLVHWAK CLQKMGRGLN SSYDQQEYIG 600
RSVHYWKKVL PLLKIIKKNS IPEPIDPLFK HFHSVDIQAS EIVEYEEDAH ITFAILDAVH 660
GNIEDAVTAF ESIKSVVSYW NLALIFHRKA EDIENDAVFP EEQEECKNYL RKTRDYLIKI 720
IDDSDSNLSV VKKLPVPLES VKEMLKSVMQ ELEDYSEGGP LYKNGSLRNA DSEIKHSTPS 780
PTKYSLSPSK SYKYSPKTPP RWAEDQNSLR KMICQEVKAI TKLNSSKSAS RHRWPTENYG 840
PDSVPDGYQG SQTFHGAPLT VATTGPSVYY SQSPAYNSQY LLRPAANVTP TKGSSNTEFK 900
STKEGFSIAV SADGFKFGIS EPGNQEKKSE KPLENDTGFQ AQDISGQKNG RGVIFGQTSS 960
TFTFADVAKS TSGEGFQFGK KDPNFKGFSG AGEKLFSSQC GKMANKANTS GDFEKDDDAC 1020
KTEDSDDIHF EPVVQMPEKV ELVTGEEGEK VLYSQGVKLF RFDAEISQWK ERGLGNLKIL 1080
KNEVNGKPRM LMRRDQVLKV CANHWITTTM NLKPLSGSDR AWMWLASDFS DGDAKLERLA 1140
AQFKTPELAE EFKQKFEECQ RLLLDIPLQT PHKLVDTGRA AKLIQRAEEM KSGLKDFKTF 1200
LTNDQTKVTE EENKGSGTGA AGASDTTIKP NPENTGPTLE WDNYDLREDA LDDNVSSSSV 1260
HDSPLASSPV RKNIFRFDES TTGFNFSFKS ALSLSKSPAK LNQSGTSVGT DEESDVTQEE 1320
ERDGQYFEPV VPLPDLVEVS SGEENEQVVF SHRAELYRYD KDVGQWKERG IGDIKILQNY 1380
DNKQVRIVMR RDQVLKLCAN HRITPDMSLQ NMKGTERVWV WTACDFADGE RKVEHLAVRF 1440
KLQDVADSFK KIFDEAKTAQ EKDSLITPHV SRSSTPRESP CGKIAVAVLE ETTRERTDVI 1500
QGDDVADAAS EVEVSSTSET TTKAVVSPPK FVFGSESVKR IFSSEKSNPF AFGNSSATGS 1560
LFGFSFNAPL KSNDSETSSV AQSGSESKVE PKKCELSKNS DIEQSSDSKV KNLSASFPME 1620
ESSINYTFKT PEKEPPLWHA EFTKEELVQK LSSTTKSADQ LNGLLRETEA TSAVLMEQIK 1680
LLKSEIRRLE RNQEESAANV EHLKNVLLQF IFLKPGSERE SLLPVINTML QLSPEEKGKL 1740
AAVAQGLQET SIPKKK 1756 
Gene Ontology
 GO:0000042; P:protein targeting to Golgi; IEA:InterPro. 
Interpro
 IPR000237; GRIP.
 IPR011993; PH_like_dom.
 IPR000156; Ran_bind_dom.
 IPR001440; TPR-1.
 IPR013026; TPR-contain_dom.
 IPR011990; TPR-like_helical.
 IPR019734; TPR_repeat. 
Pfam
 PF01465; GRIP
 PF00638; Ran_BP1
 PF00515; TPR_1 
SMART
 SM00755; Grip
 SM00160; RanBD 
PROSITE
 PS50913; GRIP
 PS50196; RANBD1
 PS50005; TPR
 PS50293; TPR_REGION 
PRINTS