CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-000166
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Nuclear pore complex protein Nup88 
Protein Synonyms/Alias
 88 kDa nucleoporin; Nucleoporin Nup84; Nucleoporin Nup88 
Gene Name
 Nup88 
Gene Synonyms/Alias
 Nup84 
Created Date
 July 27, 2013 
Organism
 Rattus norvegicus (Rat) 
NCBI Taxa ID
 10116 
Lysine Modification
Position
Peptide
Type
References
585ILKQDLAKEEIQRRVacetylation[1]
Reference
 [1] Proteomic analysis of lysine acetylation sites in rat tissues reveals organ specificity and subcellular patterns.
 Lundby A, Lage K, Weinert BT, Bekker-Jensen DB, Secher A, Skovgaard T, Kelstrup CD, Dmytriyev A, Choudhary C, Lundby C, Olsen JV.
 Cell Rep. 2012 Aug 30;2(2):419-31. [PMID: 22902405] 
Functional Description
 Essential component of nuclear pore complex. 
Sequence Annotation
 MOD_RES 35 35 Phosphoserine (By similarity).
 MOD_RES 518 518 Phosphoserine (By similarity).
 MOD_RES 541 541 Phosphoserine (By similarity).  
Keyword
 Coiled coil; Complete proteome; mRNA transport; Nuclear pore complex; Nucleus; Phosphoprotein; Protein transport; Reference proteome; Translocation; Transport. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 742 AA 
Protein Sequence
MAAAAGPVGD GELWQSWLPN HVVFLRLREG LKNQSPAEAD KPATSTSPSC PPLPPHLPTR 60
NLVFGLGGEL FLWDAEGSAF LVVRLRGPSG GSVEPPLSQY QRLLCINPPL FEIHQVLLSP 120
TQHHVALIGT KGLMALELPQ RWGKDSEFEG GKATVNCSTI PIAERFFTSS TSLTLKHAAW 180
YPSEMLDPHI VLLTSDNVIR IYSLREPQTP TKVIVLSEAE EESLILNKGR AYTASLGETA 240
VAFDFGPLVT VSKNMFEQKD REAVAYPLYI LYENGETFLT YVSLLHSPGN IGKLLGPLPM 300
HPAAEDNYGY DACAILCLPC VPNILVIATE SGMLYHCVVL EGEEDDDQTL EKSWDPRADL 360
IPSLYVFECV ELELALKLAS AEDDPFASDF SCPIKLHRDP KCPSRYHCSH EAGVHSVGLT 420
WIHKLHKFLG SDEEDKDSLQ ELTAEQKCFV EHILCTKPLP CRQPAPIRGF WIVPDILGPT 480
MICITSTYEC LIRPLLSTVH PASPPLLCTR EDAGVAESPL RILAEAPDSF EKHIKRILQR 540
SAANPALLKS SEKDLAPPPE ECLQLISRAT QVFREQYILK QDLAKEEIQR RVKLLCDQKR 600
KQLEDLNYCR EERKSLREMA ERLADKYEEA KEKQEDIMNR MKKVLHSFHT QLPVLSDSER 660
DMKKELQLIP DQLRHLGNAI KQVTMKKDYQ QRKMEKVLSP QKPTITLSAY QRKCIQSILK 720
EEGEHIREMV KQINDIRNHV NF 742 
Gene Ontology
 GO:0005643; C:nuclear pore; IDA:RGD.
 GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.
 GO:0015031; P:protein transport; IEA:UniProtKB-KW. 
Interpro
 IPR019321; Nucleoporin_Nup88. 
Pfam
 PF10168; Nup88 
SMART
  
PROSITE
  
PRINTS