CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-000311
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Phytanoyl-CoA dioxygenase, peroxisomal 
Protein Synonyms/Alias
 Phytanic acid oxidase; Phytanoyl-CoA alpha-hydroxylase; PhyH 
Gene Name
 PHYH 
Gene Synonyms/Alias
 PAHX 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
108MRDVTISKSEYAPSEubiquitination[1, 2]
310EVVGIAHKFFGAENSubiquitination[1]
Reference
 [1] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [2] hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties.
 Chen Z, Zhou Y, Song J, Zhang Z.
 Biochim Biophys Acta. 2013 Aug;1834(8):1461-7. [PMID: 23603789
Functional Description
 Converts phytanoyl-CoA to 2-hydroxyphytanoyl-CoA. 
Sequence Annotation
 REGION 175 177 Alpha-ketoglutarate binding.
 METAL 175 175 Iron.
 METAL 177 177 Iron.
 METAL 264 264 Iron.
 BINDING 120 120 Alpha-ketoglutarate.
 BINDING 157 157 Alpha-ketoglutarate.
 BINDING 193 193 Alpha-ketoglutarate.
 BINDING 266 266 Alpha-ketoglutarate.
 BINDING 275 275 Alpha-ketoglutarate.  
Keyword
 3D-structure; Alternative splicing; Cataract; Complete proteome; Deafness; Dioxygenase; Disease mutation; Ichthyosis; Iron; Metal-binding; Oxidoreductase; Peroxisome; Peroxisome biogenesis disorder; Polymorphism; Reference proteome; Retinitis pigmentosa; Transit peptide; Vitamin C. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 338 AA 
Protein Sequence
MEQLRAAARL QIVLGHLGRP SAGAVVAHPT SGTISSASFH PQQFQYTLDN NVLTLEQRKF 60
YEENGFLVIK NLVPDADIQR FRNEFEKICR KEVKPLGLTV MRDVTISKSE YAPSEKMITK 120
VQDFQEDKEL FRYCTLPEIL KYVECFTGPN IMAMHTMLIN KPPDSGKKTS RHPLHQDLHY 180
FPFRPSDLIV CAWTAMEHIS RNNGCLVVLP GTHKGSLKPH DYPKWEGGVN KMFHGIQDYE 240
ENKARVHLVM EKGDTVFFHP LLIHGSGQNK TQGFRKAISC HFASADCHYI DVKGTSQENI 300
EKEVVGIAHK FFGAENSVNL KDIWMFRARL VKGERTNL 338 
Gene Ontology
 GO:0005739; C:mitochondrion; IEA:Compara.
 GO:0005782; C:peroxisomal matrix; TAS:Reactome.
 GO:0048037; F:cofactor binding; IDA:UniProtKB.
 GO:0009055; F:electron carrier activity; TAS:UniProtKB.
 GO:0031418; F:L-ascorbic acid binding; IEA:UniProtKB-KW.
 GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
 GO:0016702; F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen; IEA:UniProtKB-KW.
 GO:0048244; F:phytanoyl-CoA dioxygenase activity; IDA:UniProtKB.
 GO:0001561; P:fatty acid alpha-oxidation; IDA:UniProtKB.
 GO:0006720; P:isoprenoid metabolic process; IDA:UniProtKB.
 GO:0097089; P:methyl-branched fatty acid metabolic process; IDA:UniProtKB. 
Interpro
 IPR008775; Phytyl_CoA_dOase. 
Pfam
 PF05721; PhyH 
SMART
  
PROSITE
  
PRINTS