CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-005020
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial 
Protein Synonyms/Alias
 Iron-sulfur subunit of complex II; Ip 
Gene Name
 Sdhb 
Gene Synonyms/Alias
 Sdh1 
Created Date
 July 27, 2013 
Organism
 Rattus norvegicus (Rat) 
NCBI Taxa ID
 10116 
Lysine Modification
Position
Peptide
Type
References
42AAAAPRIKTFAIYRWacetylation[1]
53IYRWDPDKAGDKPRMacetylation[1]
57DPDKAGDKPRMQTYKacetylation[1]
64KPRMQTYKVDLNKCGacetylation[1]
69TYKVDLNKCGPMVLDacetylation[1]
82LDALIKIKNEIDSTLacetylation[1]
125RIDTDLGKVSKIYPLacetylation[1]
128TDLGKVSKIYPLPHMacetylation[1]
153SNFYAQYKSIEPYLKacetylation[1]
160KSIEPYLKKKDESQEacetylation[1]
235FTEERLAKLQDPFSLacetylation[1]
269GKAIAEIKKMMATYKacetylation[1]
Reference
 [1] Proteomic analysis of lysine acetylation sites in rat tissues reveals organ specificity and subcellular patterns.
 Lundby A, Lage K, Weinert BT, Bekker-Jensen DB, Secher A, Skovgaard T, Kelstrup CD, Dmytriyev A, Choudhary C, Lundby C, Olsen JV.
 Cell Rep. 2012 Aug 30;2(2):419-31. [PMID: 22902405
Functional Description
 Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q) (By similarity). 
Sequence Annotation
 DOMAIN 56 135 2Fe-2S ferredoxin-type.
 DOMAIN 178 208 4Fe-4S ferredoxin-type.
 METAL 95 95 Iron-sulfur 1 (2Fe-2S) (By similarity).
 METAL 100 100 Iron-sulfur 1 (2Fe-2S) (By similarity).
 METAL 103 103 Iron-sulfur 1 (2Fe-2S) (By similarity).
 METAL 115 115 Iron-sulfur 1 (2Fe-2S) (By similarity).
 METAL 188 188 Iron-sulfur 2 (4Fe-4S) (By similarity).
 METAL 191 191 Iron-sulfur 2 (4Fe-4S) (By similarity).
 METAL 194 194 Iron-sulfur 2 (4Fe-4S) (By similarity).
 METAL 198 198 Iron-sulfur 3 (3Fe-4S) (By similarity).
 METAL 245 245 Iron-sulfur 3 (3Fe-4S) (By similarity).
 METAL 251 251 Iron-sulfur 3 (3Fe-4S) (By similarity).
 METAL 255 255 Iron-sulfur 2 (4Fe-4S) (By similarity).
 BINDING 203 203 Ubiquinone; shared with DHSD (By  
Keyword
 2Fe-2S; 3Fe-4S; 4Fe-4S; Complete proteome; Electron transport; Iron; Iron-sulfur; Membrane; Metal-binding; Mitochondrion; Mitochondrion inner membrane; Oxidoreductase; Reference proteome; Transit peptide; Transport; Tricarboxylic acid cycle. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 282 AA 
Protein Sequence
MAAVVGVSLK RGFSATALGR VGLQFQACRE AQTAAAAAPR IKTFAIYRWD PDKAGDKPRM 60
QTYKVDLNKC GPMVLDALIK IKNEIDSTLT FRRSCREGIC GSCAMNINGG NTLACTRRID 120
TDLGKVSKIY PLPHMYVIKD LVPDLSNFYA QYKSIEPYLK KKDESQEGKQ QYLQSIEDRE 180
KLDGLYECIL CACCSTSCPS YWWNGDKYLG PAVLMQAYRW MIDSRDEFTE ERLAKLQDPF 240
SLYRCHTIMN CTQTCPKGLN PGKAIAEIKK MMATYKEKRA LA 282 
Gene Ontology
 GO:0005749; C:mitochondrial respiratory chain complex II; ISS:UniProtKB.
 GO:0051537; F:2 iron, 2 sulfur cluster binding; ISS:UniProtKB.
 GO:0051538; F:3 iron, 4 sulfur cluster binding; ISS:UniProtKB.
 GO:0051539; F:4 iron, 4 sulfur cluster binding; ISS:UniProtKB.
 GO:0009055; F:electron carrier activity; IEA:InterPro.
 GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
 GO:0008177; F:succinate dehydrogenase (ubiquinone) activity; IMP:RGD.
 GO:0048039; F:ubiquinone binding; ISS:UniProtKB.
 GO:0022904; P:respiratory electron transport chain; IMP:RGD.
 GO:0006105; P:succinate metabolic process; IMP:RGD.
 GO:0006099; P:tricarboxylic acid cycle; IEA:UniProtKB-UniPathway. 
Interpro
 IPR001041; 2Fe-2S_ferredoxin-type.
 IPR006058; 2Fe2S_fd_BS.
 IPR017896; 4Fe4S_Fe-S-bd.
 IPR017900; 4Fe4S_Fe_S_CS.
 IPR012675; Beta-grasp_dom.
 IPR012285; Fum_reductase_C.
 IPR009051; Helical_ferredxn.
 IPR004489; Succ_DH/fum_Rdtase_Fe-S.
 IPR025192; Succ_DH/fum_Rdtase_N. 
Pfam
 PF13085; Fer2_3 
SMART
  
PROSITE
 PS00197; 2FE2S_FER_1
 PS51085; 2FE2S_FER_2
 PS00198; 4FE4S_FER_1
 PS51379; 4FE4S_FER_2 
PRINTS