CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-002159
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Glyceraldehyde-3-phosphate dehydrogenase 
Protein Synonyms/Alias
 GAPDH; 38 kDa BFA-dependent ADP-ribosylation substrate; BARS-38; Peptidyl-cysteine S-nitrosylase GAPDH 
Gene Name
 Gapdh 
Gene Synonyms/Alias
 Gapd 
Created Date
 July 27, 2013 
Organism
 Rattus norvegicus (Rat) 
NCBI Taxa ID
 10116 
Lysine Modification
Position
Peptide
Type
References
111EKAGAHLKGGAKRVIubiquitination[1]
192TVDGPSGKLWRDGRGubiquitination[1]
213PASTGAAKAVGKVIPubiquitination[1]
249DLTCRLEKPAKYDDIubiquitination[1]
261DDIKKVVKQAAEGPLubiquitination[1]
Reference
 [1] Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis.
 Na CH, Jones DR, Yang Y, Wang X, Xu Y, Peng J.
 J Proteome Res. 2012 Sep 7;11(9):4722-32. [PMID: 22871113
Functional Description
 Has both glyceraldehyde-3-phosphate dehydrogenase and nitrosylase activities, thereby playing a role in glycolysis and nuclear functions, respectively. Glyceraldehyde-3-phosphate dehydrogenase is a key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3- phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. Modulates the organization and assembly of the cytoskeleton. Facilitates the CHP1-dependent microtubule and membrane associations through its ability to stimulate the binding of CHP1 to microtubules. Also participates in nuclear events including transcription, RNA transport, DNA replication and apoptosis. Nuclear functions are probably due to the nitrosylase activity that mediates cysteine S- nitrosylation of nuclear target proteins such as SIRT1, HDAC2 and PRKDC. Component of the GAIT (gamma interferon-activated inhibitor of translation) complex which mediates interferon-gamma-induced transcript-selective translation inhibition in inflammation processes. Upon interferon-gamma treatment assembles into the GAIT complex which binds to stem loop-containing GAIT elements in the 3'-UTR of diverse inflammatory mRNAs (such as ceruplasmin) and suppresses their translation (By similarity). 
Sequence Annotation
 NP_BIND 11 12 NAD (By similarity).
 REGION 2 146 Interaction with WARS (By similarity).
 REGION 149 151 Glyceraldehyde 3-phosphate binding (By
 REGION 209 210 Glyceraldehyde 3-phosphate binding (By
 ACT_SITE 150 150 Nucleophile.
 BINDING 33 33 NAD (By similarity).
 BINDING 78 78 NAD; via carbonyl oxygen (By similarity).
 BINDING 120 120 NAD (By similarity).
 BINDING 180 180 Glyceraldehyde 3-phosphate (By
 BINDING 232 232 Glyceraldehyde 3-phosphate (By
 BINDING 314 314 NAD (By similarity).
 MOD_RES 3 3 N6,N6-dimethyllysine (By similarity).
 MOD_RES 7 7 Deamidated asparagine (By similarity).
 MOD_RES 40 40 Phosphotyrosine (By similarity).
 MOD_RES 59 59 N6-acetyllysine (By similarity).
 MOD_RES 62 62 Deamidated asparagine (By similarity).
 MOD_RES 64 64 N6,N6-dimethyllysine (By similarity).
 MOD_RES 68 68 Deamidated asparagine (By similarity).
 MOD_RES 73 73 Phosphothreonine (By similarity).
 MOD_RES 120 120 Phosphoserine (By similarity).
 MOD_RES 146 146 Phosphoserine (By similarity).
 MOD_RES 147 147 Deamidated asparagine (By similarity).
 MOD_RES 149 149 Phosphoserine (By similarity).
 MOD_RES 150 150 ADP-ribosylcysteine; by autocatalysis; in
 MOD_RES 150 150 Cysteine persulfide (By similarity).
 MOD_RES 150 150 S-nitrosocysteine; in reversibly
 MOD_RES 153 153 Deamidated asparagine (By similarity).
 MOD_RES 182 182 Phosphothreonine (By similarity).
 MOD_RES 192 192 N6,N6-dimethyllysine; alternate (By
 MOD_RES 192 192 N6-acetyllysine; alternate (By
 MOD_RES 192 192 N6-malonyllysine; alternate (By
 MOD_RES 209 209 Phosphothreonine (By similarity).
 MOD_RES 213 213 N6,N6-dimethyllysine; alternate (By
 MOD_RES 213 213 N6-malonyllysine; alternate (By
 MOD_RES 217 217 N6-acetyllysine (By similarity).
 MOD_RES 223 223 Deamidated asparagine (By similarity).
 MOD_RES 225 225 N6,N6-dimethyllysine; alternate (By
 MOD_RES 225 225 N6-acetyllysine; alternate (By
 MOD_RES 227 227 Phosphothreonine (By similarity).
 MOD_RES 235 235 Phosphothreonine (By similarity).
 MOD_RES 252 252 N6-acetyllysine (By similarity).
 MOD_RES 258 258 N6,N6-dimethyllysine (By similarity).
 MOD_RES 261 261 N6,N6-dimethyllysine (By similarity).
 MOD_RES 310 310 Phosphoserine (By similarity).
 MOD_RES 312 312 Phosphotyrosine (By similarity).
 MOD_RES 314 314 Deamidated asparagine (By similarity).
 MOD_RES 316 316 Phosphotyrosine (By similarity).
 MOD_RES 318 318 Phosphotyrosine (By similarity).
 MOD_RES 328 328 Phosphotyrosine (By similarity).
 MOD_RES 332 332 N6,N6-dimethyllysine (By similarity).  
Keyword
 Acetylation; ADP-ribosylation; Apoptosis; Complete proteome; Cytoplasm; Cytoskeleton; Direct protein sequencing; Glycolysis; Methylation; NAD; Nucleus; Oxidoreductase; Phosphoprotein; Reference proteome; S-nitrosylation; Transferase; Translation regulation; Ubl conjugation. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 333 AA 
Protein Sequence
MVKVGVNGFG RIGRLVTRAA FSCDKVDIVA INDPFIDLNY MVYMFQYDST HGKFNGTVKA 60
ENGKLVINGK PITIFQERDP ANIKWGDAGA EYVVESTGVF TTMEKAGAHL KGGAKRVIIS 120
APSADAPMFV MGVNHEKYDN SLKIVSNASC TTNCLAPLAK VIHDNFGIVE GLMTTVHAIT 180
ATQKTVDGPS GKLWRDGRGA AQNIIPASTG AAKAVGKVIP ELNGKLTGMA FRVPTPNVSV 240
VDLTCRLEKP AKYDDIKKVV KQAAEGPLKG ILGYTEDQVV SCDFNSNSHS STFDAGAGIA 300
LNDNFVKLIS WYDNEYGYSN RVVDLMAYMA SKE 333 
Gene Ontology
 GO:0005829; C:cytosol; IDA:UniProtKB.
 GO:0015630; C:microtubule cytoskeleton; IDA:UniProtKB.
 GO:0005634; C:nucleus; IDA:UniProtKB.
 GO:0004365; F:glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity; IDA:UniProtKB.
 GO:0008017; F:microtubule binding; IDA:UniProtKB.
 GO:0051287; F:NAD binding; IEA:InterPro.
 GO:0050661; F:NADP binding; IEA:InterPro.
 GO:0035605; F:peptidyl-cysteine S-nitrosylase activity; IDA:UniProtKB.
 GO:0006094; P:gluconeogenesis; IDA:RGD.
 GO:0006096; P:glycolysis; IDA:RGD.
 GO:0000226; P:microtubule cytoskeleton organization; IDA:UniProtKB.
 GO:0051402; P:neuron apoptotic process; IDA:UniProtKB.
 GO:0035606; P:peptidyl-cysteine S-trans-nitrosylation; IDA:UniProtKB.
 GO:0050821; P:protein stabilization; IDA:UniProtKB.
 GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
 GO:0060359; P:response to ammonium ion; IDA:RGD. 
Interpro
 IPR020831; GlycerAld/Erythrose_P_DH.
 IPR020830; GlycerAld_3-P_DH_AS.
 IPR020829; GlycerAld_3-P_DH_cat.
 IPR020828; GlycerAld_3-P_DH_NAD(P)-bd.
 IPR006424; Glyceraldehyde-3-P_DH_1.
 IPR016040; NAD(P)-bd_dom. 
Pfam
 PF02800; Gp_dh_C
 PF00044; Gp_dh_N 
SMART
 SM00846; Gp_dh_N 
PROSITE
 PS00071; GAPDH 
PRINTS
 PR00078; G3PDHDRGNASE.