CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-003091
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 NAD(P)H dehydrogenase (quinone) 
Protein Synonyms/Alias
 Flavoprotein WrbA; NAD(P)H:quinone oxidoreductase; NQO 
Gene Name
 wrbA 
Gene Synonyms/Alias
 b1004; JW0989 
Created Date
 July 27, 2013 
Organism
 Escherichia coli (strain K12) 
NCBI Taxa ID
 83333 
Lysine Modification
Position
Peptide
Type
References
28AVAEGASKVDGAEVVacetylation[1]
37DGAEVVVKRVPETMPacetylation[1, 2]
50MPPQLFEKAGGKTQTacetylation[1, 3]
Reference
 [1] Acetyl-Phosphate Is a Critical Determinant of Lysine Acetylation in E. coli.
 Weinert BT, Iesmantavicius V, Wagner SA, Schölz C, Gummesson B, Beli P, Nyström T, Choudhary C.
 Mol Cell. 2013 Jul 25;51(2):265-72. [PMID: 23830618]
 [2] Comprehensive profiling of protein lysine acetylation in Escherichia coli.
 Zhang K, Zheng S, Yang JS, Chen Y, Cheng Z.
 J Proteome Res. 2013 Feb 1;12(2):844-51. [PMID: 23294111]
 [3] Lysine acetylation is a highly abundant and evolutionarily conserved modification in Escherichia coli.
 Zhang J, Sprung R, Pei J, Tan X, Kim S, Zhu H, Liu CF, Grishin NV, Zhao Y.
 Mol Cell Proteomics. 2009 Feb;8(2):215-25. [PMID: 18723842
Functional Description
 It seems to function in response to environmental stress when various electron transfer chains are affected or when the environment is highly oxidizing. It reduces quinones to the hydroquinone state to prevent interaction of the semiquinone with O2 and production of superoxide. It prefers NADH over NADPH. 
Sequence Annotation
 DOMAIN 4 189 Flavodoxin-like.
 NP_BIND 9 14 FMN.
 NP_BIND 77 80 FMN.
 NP_BIND 112 118 FMN.
 BINDING 12 12 NAD.
 BINDING 51 51 NAD; via carbonyl oxygen.
 BINDING 98 98 Substrate.
 BINDING 133 133 FMN.  
Keyword
 3D-structure; Complete proteome; Direct protein sequencing; Flavoprotein; FMN; NAD; Nucleotide-binding; Oxidoreductase; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 198 AA 
Protein Sequence
MAKVLVLYYS MYGHIETMAR AVAEGASKVD GAEVVVKRVP ETMPPQLFEK AGGKTQTAPV 60
ATPQELADYD AIIFGTPTRF GNMSGQMRTF LDQTGGLWAS GALYGKLASV FSSTGTGGGQ 120
EQTITSTWTT LAHHGMVIVP IGYAAQELFD VSQVRGGTPY GATTIAGGDG SRQPSQEELS 180
IARYQGEYVA GLAVKLNG 198 
Gene Ontology
 GO:0016020; C:membrane; IDA:UniProtKB.
 GO:0050660; F:flavin adenine dinucleotide binding; IEA:HAMAP.
 GO:0010181; F:FMN binding; IDA:EcoCyc.
 GO:0051287; F:NAD binding; IEA:HAMAP.
 GO:0003955; F:NAD(P)H dehydrogenase (quinone) activity; IDA:EcoCyc.
 GO:0050661; F:NADP binding; IEA:HAMAP.
 GO:0045892; P:negative regulation of transcription, DNA-dependent; IEA:InterPro.
 GO:0006979; P:response to oxidative stress; IEP:EcoCyc. 
Interpro
 IPR008254; Flavodoxin/NO_synth.
 IPR010089; Flavoprotein_WrbA. 
Pfam
 PF00258; Flavodoxin_1 
SMART
  
PROSITE
 PS50902; FLAVODOXIN_LIKE 
PRINTS