CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-024398
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 DENN domain-containing protein 3 
Protein Synonyms/Alias
  
Gene Name
 DENND3 
Gene Synonyms/Alias
 KIAA0870 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
339FNSEEFLKTRAPGDHubiquitination[1]
575LISEILDKPHEASKLubiquitination[1]
581DKPHEASKLDDHVKKubiquitination[1]
Reference
 [1] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661
Functional Description
 Guanine nucleotide exchange factor (GEF) activating RAB12. Promotes the exchange of GDP to GTP, converting inactive GDP-bound RAB12 into its active GTP-bound form. Thereby, may play a role in protein transport from recycling endosomes to lysosomes regulating, for instance, the degradation of the transferrin receptor. 
Sequence Annotation
 DOMAIN 6 83 UDENN.
 DOMAIN 105 291 DENN.
 DOMAIN 354 417 dDENN.
 REPEAT 984 1026 WD 1.
 REPEAT 1073 1113 WD 2.
 REPEAT 1165 1198 WD 3.  
Keyword
 Alternative splicing; Complete proteome; Guanine-nucleotide releasing factor; Polymorphism; Reference proteome; Repeat; WD repeat. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 1198 AA 
Protein Sequence
MRSLRKKREK PRPEQWKGLP GPPRAPEPED VAVPGGVDLL TLPQLCFPGG VCVATEPKED 60
CVHFLVLTDV CGNRTYGVVA QYYRPLHDEY CFYNGKTHRE CPGCFVPFAV CVVSRFPYYN 120
SLKDCLSCLL ALLKPCKDFE VDSHIKDFAA KLSLIPSPPP GPLHLVFNMK SLQIVLPARA 180
DPESPILDLD LHLPLLCFRP EKVLQILTCI LTEQRIVFFS SDWALLTLVT ECFMAYLYPL 240
QWQHPFVPIL SDQMLDFVMA PTSFLMGCHL DHFEEVSKEA DGLVLINIDH GSITYSKSTD 300
DNVDIPDVPL LAAQTFIQRD VKNHLNYEHR VFNSEEFLKT RAPGDHQFYK QVLDTYMFHS 360
FLKARLNRRM DAFAQMDLDT QSEEDRINGM LLSPRRPTVE KRASRKSSHL HVTHRRMVVS 420
MPNLQDIAMP ELAPRNSSLR LTDTAGCRGS SAVLNVTPKS PYTFKIPEIH FPLESKCVQA 480
YHAHFVSMLS EAMCFLAPDN SLLLARYLYL RGLVYLMQGQ LLNALLDFQN LYKTDIRIFP 540
TDLVKRTVES MSAPEWEGAE QAPELMRLIS EILDKPHEAS KLDDHVKKFK LPKKHMQLGD 600
FMKRVQESGI VKDASIIHRL FEALTVGQEK QIDPETFKDF YNCWKETEAE AQEVSLPWLV 660
MEHLDKNECV CKLSSSVKTN LGVGKIAMTQ KRLFLLTEGR PGYLEISTFR NIEEVRRTTT 720
TFLLRRIPTL KIRVASKKEV FEANLKTECD LWHLMVKEMW AGKKLADDHK DPHYVQQALT 780
NVLLMDAVVG TLQSPGAIYA ASKLSYFDKM SNEMPMTLPE TTLETLKHKI NPSAGEAFPQ 840
AVDVLLYTPG HLDPAEKVED AHPKLWCALS EGKVTVFNAS SWTIHQHSFK VGTAKVNCMV 900
MADQNQVWVG SEDSVIYIIN VHSMSCNKQL TAHCSSVTDL IVQDGQEAPS NVYSCSMDGM 960
VLVWNVSTLQ VTSRFQLPRG GLTSIRLHGG RLWCCTGNSI MVMKMNGSLH QELKIEENFK 1020
DTSTSFLAFQ LLPEEEQLWA ACAGRSEVYI WSLKDLAQPP QRVPLEDCSE INCMIRVKKQ 1080
VWVGSRGLGQ GTPKGKIYVI DAERKTVEKE LVAHMDTVRT LCSAEDRYVL SGSGREEGKV 1140
AIWKGE 1146 
Gene Ontology
 GO:0017112; F:Rab guanyl-nucleotide exchange factor activity; IDA:UniProtKB.
 GO:0044257; P:cellular protein catabolic process; ISS:UniProtKB.
 GO:0008333; P:endosome to lysosome transport; ISS:UniProtKB. 
Interpro
 IPR005112; dDENN_dom.
 IPR001194; DENN_dom.
 IPR005113; uDENN_dom.
 IPR015943; WD40/YVTN_repeat-like_dom.
 IPR001680; WD40_repeat.
 IPR019775; WD40_repeat_CS.
 IPR017986; WD40_repeat_dom. 
Pfam
 PF03455; dDENN
 PF02141; DENN
 PF03456; uDENN
 PF00400; WD40 
SMART
 SM00801; dDENN
 SM00799; DENN
 SM00320; WD40 
PROSITE
 PS50947; DDENN
 PS50211; DENN
 PS50946; UDENN
 PS00678; WD_REPEATS_1
 PS50082; WD_REPEATS_2
 PS50294; WD_REPEATS_REGION 
PRINTS