CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-039673
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 Vacuolar protein sorting-associated protein 45 
Protein Synonyms/Alias
  
Gene Name
 VPS45 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
64SQNREIMKHLKAICFubiquitination[1]
76ICFLRPTKENVDYIIubiquitination[1]
128EVQQVITKEYELFEFubiquitination[1]
188SRVPGISKDLREVVLubiquitination[1, 2, 3, 4]
227NLMEDFQKKKPKEQQubiquitination[1]
228LMEDFQKKKPKEQQKubiquitination[1]
235KKPKEQQKLESIADMubiquitination[1, 4]
243LESIADMKAFVENYPubiquitination[1, 5]
253VENYPQFKKMSGTVSubiquitination[1, 6]
254ENYPQFKKMSGTVSKubiquitination[1]
302SSALQNIKRLLQNPKubiquitination[1, 4, 7, 8]
309KRLLQNPKVTEFDAAubiquitination[1, 4, 5, 6]
363AVVEYGGKRVRGSDLubiquitination[1, 4]
374GSDLFSPKDAVAITKubiquitination[1, 4, 5]
381KDAVAITKQFLKGLKubiquitination[1, 2, 4, 5, 6, 7]
414HLIKGRLKENLYPYLubiquitination[1, 2, 4, 6, 8]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [2] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [3] Proteome-wide identification of ubiquitylation sites by conjugation of engineered lysine-less ubiquitin.
 Oshikawa K, Matsumoto M, Oyamada K, Nakayama KI.
 J Proteome Res. 2012 Feb 3;11(2):796-807. [PMID: 22053931]
 [4] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302]
 [5] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [6] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661]
 [7] Global identification of modular cullin-RING ligase substrates.
 Emanuele MJ, Elia AE, Xu Q, Thoma CR, Izhar L, Leng Y, Guo A, Chen YN, Rush J, Hsu PW, Yen HC, Elledge SJ.
 Cell. 2011 Oct 14;147(2):459-74. [PMID: 21963094]
 [8] Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.
 Udeshi ND, Mani DR, Eisenhaure T, Mertins P, Jaffe JD, Clauser KR, Hacohen N, Carr SA.
 Mol Cell Proteomics. 2012 May;11(5):148-59. [PMID: 22505724
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 434 AA 
Protein Sequence
MNVVFAVKQY ISKMIEDSGP GMKVLLMDKE TTGIVSMVYT QSEILQKEVY LFERIDSQNR 60
EIMKHLKAIC FLRPTKENVD YIIQELRRPK YTIYFIYFSN VISKSDVKSL AEADEQEVVA 120
EVQQVITKEY ELFEFRRTEV PPLLLILDRC DDAITPLLNQ WTYQAMVHEL LGINNNRIDL 180
SRVPGISKDL REVVLSAEND EFYANNMYLN FAEIGSNIKN LMEDFQKKKP KEQQKLESIA 240
DMKAFVENYP QFKKMSGTVS KHVTVVGELS RLVSERNLLE VSEVEQELAC QNDHSSALQN 300
IKRLLQNPKV TEFDAARLVM LYALHYERHS SNSLPGLMMD LRNKGVSEKY RKLVSAVVEY 360
GGKRVRGSDL FSPKDAVAIT KQFLKGLKGV ENVYTQHQPF LHETLDHLIK GRLKENLYPY 420
LGPSTLRDRI ASCL 434 
Gene Ontology
 GO:0006904; P:vesicle docking involved in exocytosis; IEA:InterPro. 
Interpro
 IPR027482; Sec-1-like_dom2.
 IPR001619; Sec1-like. 
Pfam
 PF00995; Sec1 
SMART
  
PROSITE
  
PRINTS