CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-031323
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Serine hydroxymethyltransferase 
Protein Synonyms/Alias
  
Gene Name
  
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
209MPYKLNPKTGLIDYNubiquitination[1, 2, 3]
278KVIPSPFKHADIVTTubiquitination[2]
478TAKLQDFKSFLLKDSubiquitination[2]
Reference
 [1] Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.
 Udeshi ND, Mani DR, Eisenhaure T, Mertins P, Jaffe JD, Clauser KR, Hacohen N, Carr SA.
 Mol Cell Proteomics. 2012 May;11(5):148-59. [PMID: 22505724]
 [2] Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass.
 Povlsen LK, Beli P, Wagner SA, Poulsen SL, Sylvestersen KB, Poulsen JW, Nielsen ML, Bekker-Jensen S, Mailand N, Choudhary C.
 Nat Cell Biol. 2012 Oct;14(10):1089-98. [PMID: 23000965]
 [3] hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties.
 Chen Z, Zhou Y, Song J, Zhang Z.
 Biochim Biophys Acta. 2013 Aug;1834(8):1461-7. [PMID: 23603789
Functional Description
 Interconversion of serine and glycine (By similarity). 
Sequence Annotation
  
Keyword
 Methyltransferase; One-carbon metabolism; Pyridoxal phosphate; Transferase. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 513 AA 
Protein Sequence
MSGVFGLVSQ AEPFRPALSP ADDATELHCL HQAGVPAAVR AGRRWNGLCR DVGSWSGWPF 60
GLSTATQPRL RLGKQTGAGQ ARRACRTVIL RCGSCCRGRR TGSVVAWSSL PQRYYGRAEV 120
VDEIELLCQR RALEAFDLDP AQWGVNVQPY SGSPANLAVY TALLQPHDRI MGLDPPDGGH 180
LTHGYMSDVK RISATSIFFE SMPYKLNPKT GLIDYNQLAL TARLFRPRLI IAGTSAYARL 240
IDYARMREVC DEVKAHLLAD MAHISGLVAA KVIPSPFKHA DIVTTTTHKT LRGARSGLIF 300
YRKGVKAVDP KTGREIPYTF EDRINFAVFP SLQGGPHNHA IAAVAVALKQ ACTPMFREYS 360
LQVLKNARAM ADALLERGYS LVSGGTDNHL VLVDLRPKGL DGARAERVLE LVSITANKNT 420
CPGDRSAITP GGLRLGAPAL TSRQFREDDF RRVVDFIDEG VNIGLEVKSK TAKLQDFKSF 480
LLKDSETSQR LANLRQRVEQ FARAFPMPGF DEH 513 
Gene Ontology
 GO:0004372; F:glycine hydroxymethyltransferase activity; IEA:EC.
 GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW.
 GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro.
 GO:0006544; P:glycine metabolic process; IEA:InterPro.
 GO:0006563; P:L-serine metabolic process; IEA:InterPro.
 GO:0035999; P:tetrahydrofolate interconversion; IEA:UniProtKB-UniPathway. 
Interpro
 IPR015424; PyrdxlP-dep_Trfase.
 IPR015421; PyrdxlP-dep_Trfase_major_sub1.
 IPR015422; PyrdxlP-dep_Trfase_major_sub2.
 IPR001085; Ser_HO-MeTrfase.
 IPR019798; Ser_HO-MeTrfase_PLP_BS. 
Pfam
 PF00464; SHMT 
SMART
  
PROSITE
 PS00096; SHMT 
PRINTS