CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-012502
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Phosphomevalonate kinase 
Protein Synonyms/Alias
 PMKase; hPMK 
Gene Name
 PMVK 
Gene Synonyms/Alias
 PMKI 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
17LVLLFSGKRKSGKDFubiquitination[1]
19LLFSGKRKSGKDFVTubiquitination[2]
22SGKRKSGKDFVTEALubiquitination[1, 2]
48LRLSGPLKEQYAQEHacetylation[3]
48LRLSGPLKEQYAQEHubiquitination[1, 2, 4, 5, 6, 7]
69LLDTSTYKEAFRKDMubiquitination[1, 2, 4, 5, 6]
94DPGFFCRKIVEGISQubiquitination[2]
Reference
 [1] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [2] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [3] Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3.
 Sol EM, Wagner SA, Weinert BT, Kumar A, Kim HS, Deng CX, Choudhary C.
 PLoS One. 2012;7(12):e50545. [PMID: 23236377]
 [4] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [5] Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass.
 Povlsen LK, Beli P, Wagner SA, Poulsen SL, Sylvestersen KB, Poulsen JW, Nielsen ML, Bekker-Jensen S, Mailand N, Choudhary C.
 Nat Cell Biol. 2012 Oct;14(10):1089-98. [PMID: 23000965]
 [6] hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties.
 Chen Z, Zhou Y, Song J, Zhang Z.
 Biochim Biophys Acta. 2013 Aug;1834(8):1461-7. [PMID: 23603789]
 [7] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302
Functional Description
  
Sequence Annotation
 NP_BIND 17 23 ATP (Probable).
 MOTIF 190 192 Microbody targeting signal (Potential).
 BINDING 141 141 ATP (Probable).
 BINDING 170 170 Substrate.
 BINDING 171 171 ATP (Probable).
 BINDING 176 176 ATP (Probable).
 BINDING 180 180 ATP (Probable).  
Keyword
 3D-structure; ATP-binding; Cholesterol biosynthesis; Cholesterol metabolism; Complete proteome; Kinase; Lipid biosynthesis; Lipid metabolism; Nucleotide-binding; Peroxisome; Polymorphism; Reference proteome; Steroid biosynthesis; Steroid metabolism; Sterol biosynthesis; Sterol metabolism; Transferase. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 192 AA 
Protein Sequence
MAPLGGAPRL VLLFSGKRKS GKDFVTEALQ SRLGADVCAV LRLSGPLKEQ YAQEHGLNFQ 60
RLLDTSTYKE AFRKDMIRWG EEKRQADPGF FCRKIVEGIS QPIWLVSDTR RVSDIQWFRE 120
AYGAVTQTVR VVALEQSRQQ RGWVFTPGVD DAESECGLDN FGDFDWVIEN HGVEQRLEEQ 180
LENLIEFIRS RL 192 
Gene Ontology
 GO:0005829; C:cytosol; IDA:UniProtKB.
 GO:0005777; C:peroxisome; IDA:UniProtKB.
 GO:0005524; F:ATP binding; IDA:UniProtKB.
 GO:0004631; F:phosphomevalonate kinase activity; IDA:UniProtKB.
 GO:0006695; P:cholesterol biosynthetic process; IDA:UniProtKB.
 GO:0019287; P:isopentenyl diphosphate biosynthetic process, mevalonate pathway; IEA:UniProtKB-UniPathway.
 GO:0070723; P:response to cholesterol; IEP:UniProtKB. 
Interpro
 IPR027417; P-loop_NTPase.
 IPR005919; Pmev_kin_anim. 
Pfam
 PF04275; P-mevalo_kinase 
SMART
  
PROSITE
  
PRINTS