CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-027729
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 TRIM47 protein 
Protein Synonyms/Alias
 Tripartite motif-containing 47, isoform CRA_c; Tripartite motif-containing protein 47 
Gene Name
 TRIM47 
Gene Synonyms/Alias
 hCG_1776094 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
123PRELSFTKSSQAVRAubiquitination[1, 2, 3, 4]
158GNEDGPQKLDSEADAubiquitination[1, 2, 4]
209FLQLFGTKGVKRVLCubiquitination[1, 4]
330FYAVRDGKMSLLRRLubiquitination[2, 3, 4]
372GLFTHRLKPAFFLESubiquitination[2, 4]
390HLQIGPLKKSCISVLubiquitination[4]
391LQIGPLKKSCISVLKubiquitination[3]
398KSCISVLKRR*****ubiquitination[1, 2, 3]
Reference
 [1] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [2] Global identification of modular cullin-RING ligase substrates.
 Emanuele MJ, Elia AE, Xu Q, Thoma CR, Izhar L, Leng Y, Guo A, Chen YN, Rush J, Hsu PW, Yen HC, Elledge SJ.
 Cell. 2011 Oct 14;147(2):459-74. [PMID: 21963094]
 [3] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [4] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 400 AA 
Protein Sequence
MDELGAGIAQ SRRTVALIKS AAVAERERVS RLFADAAAAL QGFQTQVLGF IEEGEAAMLG 60
RSQGDLRRQE EQRSRLSRAR QNLSQVPEAD SVSFLQELLA LRLALEDGCG PGPGPPRELS 120
FTKSSQAVRA VRDMLAVACV NQWEQLRGPG GNEDGPQKLD SEADAEPQDL ESTNLLESEA 180
PRDYFLKFAY IVDLDSDTAD KFLQLFGTKG VKRVLCPINY PLSPTRFTHC EQVLGEGALD 240
RGTYYWEVEI IEGWVSMGVM AEDFSPQEPY DRGRLGRNAH SCCLQWNGRS FSVWFHGLEA 300
PLPHPFSPTV GVCLEYADRA LAFYAVRDGK MSLLRRLKAS RPRRGGIPAS PIDPFQSRLD 360
SHFAGLFTHR LKPAFFLESV DAHLQIGPLK KSCISVLKRR 400 
Gene Ontology
  
Interpro
 IPR001870; B30.2/SPRY.
 IPR003879; Butyrophylin.
 IPR008985; ConA-like_lec_gl_sf.
 IPR006574; PRY.
 IPR003877; SPRY_rcpt. 
Pfam
 PF00622; SPRY 
SMART
 SM00589; PRY 
PROSITE
 PS50188; B302_SPRY 
PRINTS
 PR01407; BUTYPHLNCDUF.