CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-023892
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Nucleoside diphosphate kinase 7 
Protein Synonyms/Alias
 NDK 7; NDP kinase 7; nm23-H7 
Gene Name
 NME7 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
41SVEMHDVKNHRTFLKubiquitination[1, 2]
51RTFLKRTKYDNLHLEubiquitination[1, 2, 3, 4]
65EDLFIGNKVNVFSRQubiquitination[1, 2]
99EKTLALIKPDAISKAubiquitination[2]
105IKPDAISKAGEIIEIubiquitination[2]
Reference
 [1] Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass.
 Povlsen LK, Beli P, Wagner SA, Poulsen SL, Sylvestersen KB, Poulsen JW, Nielsen ML, Bekker-Jensen S, Mailand N, Choudhary C.
 Nat Cell Biol. 2012 Oct;14(10):1089-98. [PMID: 23000965]
 [2] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [3] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [4] hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties.
 Chen Z, Zhou Y, Song J, Zhang Z.
 Biochim Biophys Acta. 2013 Aug;1834(8):1461-7. [PMID: 23603789
Functional Description
 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. 
Sequence Annotation
 DOMAIN 3 91 DM10.
 ACT_SITE 206 206 Pros-phosphohistidine intermediate (By
 BINDING 99 99 ATP (By similarity).
 BINDING 145 145 ATP (By similarity).
 BINDING 193 193 ATP (By similarity).
 BINDING 203 203 ATP (By similarity).  
Keyword
 Alternative splicing; ATP-binding; Complete proteome; Kinase; Magnesium; Metal-binding; Nucleotide metabolism; Nucleotide-binding; Reference proteome; Transferase. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 376 AA 
Protein Sequence
MNHSERFVFI AEWYDPNASL LRRYELLFYP GDGSVEMHDV KNHRTFLKRT KYDNLHLEDL 60
FIGNKVNVFS RQLVLIDYGD QYTARQLGSR KEKTLALIKP DAISKAGEII EIINKAGFTI 120
TKLKMMMLSR KEALDFHVDH QSRPFFNELI QFITTGPIIA MEILRDDAIC EWKRLLGPAN 180
SGVARTDASE SIRALFGTDG IRNAAHGPDS FASAAREMEL FFPSSGGCGP ANTAKFTNCT 240
CCIVKPHAVS EGLLGKILMA IRDAGFEISA MQMFNMDRVN VEEFYEVYKG VVTEYHDMVT 300
EMYSGPCVAM EIQQNNATKT FREFCGPADP EIARHLRPGT LRAIFGKTKI QNAVHCTDLP 360
EDGLLEVQYF FKILDN 376 
Gene Ontology
 GO:0005813; C:centrosome; IDA:UniProtKB.
 GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
 GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
 GO:0004550; F:nucleoside diphosphate kinase activity; IEA:EC.
 GO:0007420; P:brain development; IEA:Compara.
 GO:0060830; P:ciliary receptor clustering involved in smoothened signaling pathway; IEA:Compara.
 GO:0006241; P:CTP biosynthetic process; IEA:InterPro.
 GO:0007368; P:determination of left/right symmetry; IEA:Compara.
 GO:0003351; P:epithelial cilium movement; IEA:Compara.
 GO:0006183; P:GTP biosynthetic process; IEA:InterPro.
 GO:0042073; P:intraflagellar transport; IEA:Compara.
 GO:0060972; P:left/right pattern formation; IEA:Compara.
 GO:0006228; P:UTP biosynthetic process; IEA:InterPro. 
Interpro
 IPR011410; NDK7.
 IPR001564; Nucleoside_diP_kinase.
 IPR006602; Uncharacterised_DM10. 
Pfam
 PF00334; NDK 
SMART
 SM00676; DM10
 SM00562; NDK 
PROSITE
 PS51336; DM10
 PS00469; NDP_KINASES 
PRINTS
 PR01243; NUCDPKINASE.