CPLM 1.0 - Compendium of Protein Lysine Modification
Tag
Content
CPLM ID
CPLM-031515
UniProt Accession
B4E1S6_HUMAN
;
B4E1S6
Genbank Protein ID
AL021578
;
AK303964
;
CH471077
Genbank Nucleotide ID
BAG64888.1
;
EAW75860.1
Protein Name
Syndecan
Protein Synonyms/Alias
Gene Name
SDC4
Gene Synonyms/Alias
hCG_38363
Created Date
July 27, 2013
Organism
Homo sapiens (Human)
NCBI Taxa ID
9606
Lysine Modification
Position
Peptide
Type
References
118
GKKPIYK
K
APTNEFY
ubiquitination
[1]
Reference
[1] Systematic and quantitative assessment of the ubiquitin-modified proteome.
Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
Mol Cell. 2011 Oct 21;44(2):325-40. [
PMID: 21906983
]
Functional Description
Cell surface proteoglycan (By similarity).
Sequence Annotation
Keyword
Complete proteome; Glycoprotein; Heparan sulfate; Membrane; Proteoglycan; Reference proteome; Transmembrane.
Sequence Source
UniProt (SWISSPROT/TrEMBL); GenBank; EMBL
Protein Length
126 AA
Protein Sequence
MIGPEVVHPL VPLDNHIPER AGSGSQVPTE PKKLEENEVI PKRISPVEES EDVSNKVSMS 60
STVQGSNIFE RTEVLAALIV GGIVGILFAV FLILLLMYRM KKKDEGSYDL GKKPIYKKAP 120
TNEFYA 126
Gene Ontology
GO:0009986
; C:cell surface; IEA:Compara.
GO:0043034
; C:costamere; IEA:Compara.
GO:0005925
; C:focal adhesion; IEA:Compara.
GO:0016021
; C:integral to membrane; IEA:UniProtKB-KW.
GO:0045121
; C:membrane raft; IEA:Compara.
GO:0051894
; P:positive regulation of focal adhesion assembly; IEA:Compara.
GO:0045860
; P:positive regulation of protein kinase activity; IEA:Compara.
GO:0051496
; P:positive regulation of stress fiber assembly; IEA:Compara.
GO:0001657
; P:ureteric bud development; IEA:Compara.
Interpro
IPR003585
; Neurexin-like.
IPR001050
; Syndecan.
Pfam
PF01034
; Syndecan
SMART
SM00294
; 4.1m
PROSITE
PS00964
; SYNDECAN
PRINTS