CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-008693
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial 
Protein Synonyms/Alias
 Branched-chain alpha-keto acid dehydrogenase complex component E2; BCKAD-E2; BCKADE2; Dihydrolipoamide acetyltransferase component of branched-chain alpha-keto acid dehydrogenase complex; Dihydrolipoamide branched chain transacylase; Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase 
Gene Name
 Dbt 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
68QGQVVQFKLSDIGEGacetylation[1]
82GIREVTIKEWYVKEGacetylation[1, 2, 3]
119SRYDGVIKRLYYNLDacetylation[1]
133DDIAYVGKPLIDIETacetylation[4]
133DDIAYVGKPLIDIETsuccinylation[4]
196SEVVGSGKDGRILKEacetylation[1, 2, 4]
196SEVVGSGKDGRILKEsuccinylation[4]
202GKDGRILKEDILSFLacetylation[1, 5, 6, 7]
211DILSFLEKQTGAILPacetylation[4]
211DILSFLEKQTGAILPsuccinylation[4]
233TPPPPQPKDRTFPTPacetylation[1, 2]
243TFPTPIAKPPVFTGKacetylation[1]
250KPPVFTGKDRTEPVTacetylation[1, 2, 3]
261EPVTGFQKAMVKTMSacetylation[1, 2, 3, 4]
261EPVTGFQKAMVKTMSsuccinylation[4]
265GFQKAMVKTMSAALKacetylation[2, 3, 4]
265GFQKAMVKTMSAALKsuccinylation[4]
289IDLTQLVKLREELKPacetylation[1, 4]
289IDLTQLVKLREELKPsuccinylation[4]
295VKLREELKPVALARGacetylation[1, 2, 3, 6, 8]
304VALARGIKLSFMPFFacetylation[1, 2]
379MELNRLQKLGSSGQLacetylation[1]
410SIGGTYAKPVILPPEacetylation[4]
410SIGGTYAKPVILPPEsuccinylation[4]
427IGALGAIKALPRFDQacetylation[7]
435ALPRFDQKGDVYKAQacetylation[1, 2, 3, 4]
435ALPRFDQKGDVYKAQsuccinylation[4]
440DQKGDVYKAQIMNVSacetylation[1, 2, 3, 4, 6]
440DQKGDVYKAQIMNVSsuccinylation[4]
Reference
 [1] Label-free quantitative proteomics of the lysine acetylome in mitochondria identifies substrates of SIRT3 in metabolic pathways.
 Rardin MJ, Newman JC, Held JM, Cusack MP, Sorensen DJ, Li B, Schilling B, Mooney SD, Kahn CR, Verdin E, Gibson BW.
 Proc Natl Acad Sci U S A. 2013 Apr 16;110(16):6601-6. [PMID: 23576753]
 [2] Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome.
 Hebert AS, Dittenhafer-Reed KE, Yu W, Bailey DJ, Selen ES, Boersma MD, Carson JJ, Tonelli M, Balloon AJ, Higbee AJ, Westphall MS, Pagliarini DJ, Prolla TA, Assadi-Porter F, Roy S, Denu JM, Coon JJ.
 Mol Cell. 2013 Jan 10;49(1):186-99. [PMID: 23201123]
 [3] Quantification of mitochondrial acetylation dynamics highlights prominent sites of metabolic regulation.
 Still AJ, Floyd BJ, Hebert AS, Bingman CA, Carson JJ, Gunderson DR, Dolan BK, Grimsrud PA, Dittenhafer-Reed KE, Stapleton DS, Keller MP, Westphall MS, Denu JM, Attie AD, Coon JJ, Pagliarini DJ.
 J Biol Chem. 2013 Jul 17;. [PMID: 23864654]
 [4] SIRT5-Mediated Lysine Desuccinylation Impacts Diverse Metabolic Pathways.
 Park J, Chen Y, Tishkoff DX, Peng C, Tan M, Dai L, Xie Z, Zhang Y, Zwaans BM, Skinner ME, Lombard DB, Zhao Y.
 Mol Cell. 2013 Jun 27;50(6):919-30. [PMID: 23806337]
 [5] Mitochondrial acetylome analysis in a mouse model of alcohol-induced liver injury utilizing SIRT3 knockout mice.
 Fritz KS, Galligan JJ, Hirschey MD, Verdin E, Petersen DR.
 J Proteome Res. 2012 Mar 2;11(3):1633-43. [PMID: 22309199]
 [6] Quantitative assessment of the impact of the gut microbiota on lysine epsilon-acetylation of host proteins using gnotobiotic mice.
 Simon GM, Cheng J, Gordon JI.
 Proc Natl Acad Sci U S A. 2012 Jul 10;109(28):11133-8. [PMID: 22733758]
 [7] Quantitative acetylome analysis reveals the roles of SIRT1 in regulating diverse substrates and cellular pathways.
 Chen Y, Zhao W, Yang JS, Cheng Z, Luo H, Lu Z, Tan M, Gu W, Zhao Y.
 Mol Cell Proteomics. 2012 Oct;11(10):1048-62. [PMID: 22826441]
 [8] Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3.
 Sol EM, Wagner SA, Weinert BT, Kumar A, Kim HS, Deng CX, Choudhary C.
 PLoS One. 2012;7(12):e50545. [PMID: 23236377
Functional Description
 The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Within this complex, the catalytic function of this enzyme is to accept, and to transfer to coenzyme A, acyl groups that are generated by the branched-chain alpha-keto acid decarboxylase component. 
Sequence Annotation
 DOMAIN 65 138 Lipoyl-binding.
 ACT_SITE 452 452 Potential.
 ACT_SITE 456 456 Potential.
 MOD_RES 105 105 N6-lipoyllysine (By similarity).
 MOD_RES 295 295 N6-acetyllysine (By similarity).  
Keyword
 Acetylation; Acyltransferase; Complete proteome; Lipoyl; Mitochondrion; Reference proteome; Transferase; Transit peptide. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 482 AA 
Protein Sequence
MAAARVLRTW SQNAVRLTCV RYFQTFNSAR VLKPKCVCSV GYPLFKYSQP RHSLRTAAVL 60
QGQVVQFKLS DIGEGIREVT IKEWYVKEGD TVSQFDSICE VQSDKASVTI TSRYDGVIKR 120
LYYNLDDIAY VGKPLIDIET EALKDSEEDV VETPAVSHDE HTHQEIKGQK TLATPAVRRL 180
AMENNIKLSE VVGSGKDGRI LKEDILSFLE KQTGAILPPS PKSEITPPPP QPKDRTFPTP 240
IAKPPVFTGK DRTEPVTGFQ KAMVKTMSAA LKIPHFGYCD EIDLTQLVKL REELKPVALA 300
RGIKLSFMPF FLKAASLGLL QFPILNASVD ENCQNITYKA SHNIGIAMDT ELGLIVPNVK 360
NVQVRSVFEI AMELNRLQKL GSSGQLGTTD LTGGTFTLSN IGSIGGTYAK PVILPPEVAI 420
GALGAIKALP RFDQKGDVYK AQIMNVSWSA DHRVIDGATM SRFSNLWKSY LENPAFMLLD 480
LK 482 
Gene Ontology
 GO:0015630; C:microtubule cytoskeleton; IEA:Compara.
 GO:0042645; C:mitochondrial nucleoid; IEA:Compara.
 GO:0005739; C:mitochondrion; IDA:MGI.
 GO:0048037; F:cofactor binding; IEA:InterPro.
 GO:0043754; F:dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity; IEA:EC.
 GO:0046949; P:fatty-acyl-CoA biosynthetic process; IEA:InterPro. 
Interpro
 IPR003016; 2-oxoA_DH_lipoyl-BS.
 IPR001078; 2-oxoacid_DH_actylTfrase.
 IPR000089; Biotin_lipoyl.
 IPR023213; CAT-like_dom.
 IPR004167; E3-bd.
 IPR015761; Lip_Acyl_TA.
 IPR011053; Single_hybrid_motif. 
Pfam
 PF00198; 2-oxoacid_dh
 PF00364; Biotin_lipoyl
 PF02817; E3_binding 
SMART
  
PROSITE
 PS50968; BIOTINYL_LIPOYL
 PS00189; LIPOYL 
PRINTS