CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-010861
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Nucleolar protein 3 
Protein Synonyms/Alias
 Mitochondrial targeting suppressor 1 protein; Nuclear polyadenylated RNA-binding protein 1 
Gene Name
 NPL3 
Gene Synonyms/Alias
 MTR13; MTS1; NAB1; NOP3; YDR432W; D9461.19 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
181AIEEVHGKSFANQPLacetylation[1]
194PLEVVYSKLPAKRYRacetylation[1]
Reference
 [1] Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae.
 Henriksen P, Wagner SA, Weinert BT, Sharma S, Bacinskaja G, Rehman M, Juffer AH, Walther TC, Lisby M, Choudhary C.
 Mol Cell Proteomics. 2012 Nov;11(11):1510-22. [PMID: 22865919
Functional Description
 Required for pre-rRNA processing and nuclear import as well as mitochondrial protein targeting. Binds to poly(A). 
Sequence Annotation
 DOMAIN 125 195 RRM 1.
 DOMAIN 200 275 RRM 2.
 MOD_RES 182 182 Phosphoserine.
 MOD_RES 224 224 Phosphoserine.  
Keyword
 3D-structure; Complete proteome; Nucleus; Phosphoprotein; Reference proteome; Repeat; Ribonucleoprotein; Ribosome biogenesis; RNA-binding; rRNA processing. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 414 AA 
Protein Sequence
MSEAQETHVE QLPESVVDAP VEEQHQEPPQ APDAPQEPQV PQESAPQESA PQEPPAPQEQ 60
NDVPPPSNAP IYEGEESHSV QDYQEAHQHH QPPEPQPYYP PPPPGEHMHG RPPMHHRQEG 120
ELSNTRLFVR PFPLDVQESE LNEIFGPFGP MKEVKILNGF AFVEFEEAES AAKAIEEVHG 180
KSFANQPLEV VYSKLPAKRY RITMKNLPEG CSWQDLKDLA RENSLETTFS SVNTRDFDGT 240
GALEFPSEEI LVEALERLNN IEFRGSVITV ERDDNPPPIR RSNRGGFRGR GGFRGGFRGG 300
FRGGFSRGGF GGPRGGFGGP RGGYGGYSRG GYGGYSRGGY GGSRGGYDSP RGGYDSPRGG 360
YSRGGYGGPR NDYGPPRGSY GGSRGGYDGP RGDYGPPRDA YRTRDAPRER SPTR 414 
Gene Ontology
 GO:0005737; C:cytoplasm; IMP:SGD.
 GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
 GO:0005634; C:nucleus; IDA:SGD.
 GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
 GO:0031370; F:eukaryotic initiation factor 4G binding; IDA:SGD.
 GO:0000166; F:nucleotide binding; IEA:InterPro.
 GO:0008143; F:poly(A) RNA binding; IDA:SGD.
 GO:0006406; P:mRNA export from nucleus; IGI:SGD.
 GO:0000398; P:mRNA splicing, via spliceosome; IMP:SGD.
 GO:2000805; P:negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled; IMP:SGD.
 GO:0017148; P:negative regulation of translation; IDA:SGD.
 GO:0032968; P:positive regulation of transcription elongation from RNA polymerase II promoter; IMP:SGD.
 GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
 GO:0006415; P:translational termination; IMP:SGD. 
Interpro
 IPR012677; Nucleotide-bd_a/b_plait.
 IPR000504; RRM_dom. 
Pfam
 PF00076; RRM_1 
SMART
 SM00360; RRM 
PROSITE
 PS50102; RRM 
PRINTS