CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-006917
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Actin-related protein 2/3 complex subunit 1 
Protein Synonyms/Alias
 Arp2/3 complex 41 kDa subunit; p41-ARC 
Gene Name
 ARC40 
Gene Synonyms/Alias
 YBR234C; YBR1532 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
19VAVYKLVKAPIYSHCubiquitination[1]
98PLSDGTYKPTLVLLRubiquitination[1]
121TWAPNGYKFAVGSSAmethylation[2]
185RVFSGFIKGLDSKESacetylation[3]
190FIKGLDSKESVAGSPacetylation[3]
Reference
 [1] Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation.
 Swaney DL, Beltrao P, Starita L, Guo A, Rush J, Fields S, Krogan NJ, VillĂ©n J.
 Nat Methods. 2013 Jul;10(7):676-82. [PMID: 23749301]
 [2] Identification of arginine- and lysine-methylation in the proteome of Saccharomyces cerevisiae and its functional implications.
 Pang CN, Gasteiger E, Wilkins MR.
 BMC Genomics. 2010 Feb 5;11:92. [PMID: 20137074]
 [3] Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae.
 Henriksen P, Wagner SA, Weinert BT, Sharma S, Bacinskaja G, Rehman M, Juffer AH, Walther TC, Lisby M, Choudhary C.
 Mol Cell Proteomics. 2012 Nov;11(11):1510-22. [PMID: 22865919
Functional Description
 Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks (By similarity). 
Sequence Annotation
 REPEAT 61 99 WD 1.
 REPEAT 105 146 WD 2.
 REPEAT 151 190 WD 3.
 REPEAT 212 251 WD 4.
 REPEAT 349 383 WD 5.  
Keyword
 Actin-binding; Complete proteome; Cytoplasm; Cytoskeleton; Reference proteome; Repeat; WD repeat. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 384 AA 
Protein Sequence
MSFSNSKDKS VVAVYKLVKA PIYSHCFSQD KSILAVTCET DCLVYRVSNN TPPVLFATLK 60
DHDKTITAVD ISIHGRIVTC SQDRNAYVWE PLSDGTYKPT LVLLRINRAA TSVTWAPNGY 120
KFAVGSSARI IAVCYYEHEN NWWVSKHIKK PIKSTINCLS WHANGVLLAA GGTDGFMRVF 180
SGFIKGLDSK ESVAGSPWGQ KFPFGCLIRE WYQGSYIHDV EWRSQMERIA YVAHDGTLNV 240
VDYQSPVQSV NAPEGLPYRS LVWINDHEIV CGGYSCHPVL FSEASEGWKF AKNLDKSDNN 300
KSSALTASGN TDELSGNNDE SSTFGISALR KFKELDLKGK VSTDVQESAH ENAIVELRPF 360
AESNGQITQV SSCGLDGKIV IYTI 384 
Gene Ontology
 GO:0030479; C:actin cortical patch; IEA:UniProtKB-SubCell.
 GO:0005885; C:Arp2/3 protein complex; IDA:SGD.
 GO:0043130; F:ubiquitin binding; IDA:SGD.
 GO:0045010; P:actin nucleation; IDA:SGD. 
Interpro
 IPR017383; ARPC2/3_su1.
 IPR015943; WD40/YVTN_repeat-like_dom.
 IPR001680; WD40_repeat.
 IPR017986; WD40_repeat_dom. 
Pfam
 PF00400; WD40 
SMART
 SM00320; WD40 
PROSITE
 PS00678; WD_REPEATS_1
 PS50082; WD_REPEATS_2
 PS50294; WD_REPEATS_REGION 
PRINTS