CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-008521
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Probable pyruvate-flavodoxin oxidoreductase 
Protein Synonyms/Alias
  
Gene Name
 ydbK 
Gene Synonyms/Alias
 b1378; JW1372 
Created Date
 July 27, 2013 
Organism
 Escherichia coli (strain K12) 
NCBI Taxa ID
 83333 
Lysine Modification
Position
Peptide
Type
References
435DGSVSATKNNIKIIGacetylation[1]
593IAKSYSSKGQDLVERacetylation[1]
907LLDQFADKIPAELLTacetylation[1]
1012TPLGAVTKFGEHGKRacetylation[1]
Reference
 [1] Acetyl-Phosphate Is a Critical Determinant of Lysine Acetylation in E. coli.
 Weinert BT, Iesmantavicius V, Wagner SA, Schölz C, Gummesson B, Beli P, Nyström T, Choudhary C.
 Mol Cell. 2013 Jul 25;51(2):265-72. [PMID: 23830618
Functional Description
 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin (Potential). 
Sequence Annotation
 DOMAIN 680 709 4Fe-4S ferredoxin-type 1.
 DOMAIN 736 765 4Fe-4S ferredoxin-type 2.
 METAL 689 689 Iron-sulfur 1 (4Fe-4S) (Potential).
 METAL 692 692 Iron-sulfur 1 (4Fe-4S) (Potential).
 METAL 695 695 Iron-sulfur 1 (4Fe-4S) (Potential).
 METAL 699 699 Iron-sulfur 2 (4Fe-4S) (Potential).
 METAL 745 745 Iron-sulfur 2 (4Fe-4S) (Potential).
 METAL 748 748 Iron-sulfur 2 (4Fe-4S) (Potential).
 METAL 751 751 Iron-sulfur 2 (4Fe-4S) (Potential).
 METAL 755 755 Iron-sulfur 1 (4Fe-4S) (Potential).  
Keyword
 4Fe-4S; Complete proteome; Electron transport; Iron; Iron-sulfur; Metal-binding; Oxidoreductase; Reference proteome; Repeat; Transport. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 1174 AA 
Protein Sequence
MITIDGNGAV ASVAFRTSEV IAIYPITPSS TMAEQADAWA GNGLKNVWGD TPRVVEMQSE 60
AGAIATVHGA LQTGALSTSF TSSQGLLLMI PTLYKLAGEL TPFVLHVAAR TVATHALSIF 120
GDHSDVMAVR QTGCAMLCAA NVQEAQDFAL ISQIATLKSR VPFIHFFDGF RTSHEINKIV 180
PLADDTILDL MPQVEIDAHR ARALNPEHPV IRGTSANPDT YFQSREATNP WYNAVYDHVE 240
QAMNDFSAAT GRQYQPFEYY GHPQAERVII LMGSAIGTCE EVVDELLTRG EKVGVLKVRL 300
YRPFSAKHLL QALPGSVRSV AVLDRTKEPG AQAEPLYLDV MTALAEAFNN GERETLPRVI 360
GGRYGLSSKE FGPDCVLAVF AELNAAKPKA RFTVGIYDDV TNLSLPLPEN TLPNSAKLEA 420
LFYGLGSDGS VSATKNNIKI IGNSTPWYAQ GYFVYDSKKA GGLTVSHLRV SEQPIRSAYL 480
ISQADFVGCH QLQFIDKYQM AERLKPGGIF LLNTPYSADE VWSRLPQEVQ AVLNQKKARF 540
YVINAAKIAR ECGLAARINT VMQMAFFHLT QILPGDSALA ELQGAIAKSY SSKGQDLVER 600
NWQALALARE SVEEVPLQPV NPHSANRPPV VSDAAPDFVK TVTAAMLAGL GDALPVSALP 660
PDGTWPMGTT RWEKRNIAEE IPIWKEELCT QCNHCVAACP HSAIRAKVVP PEAMENAPAS 720
LHSLDVKSRD MRGQKYVLQV APEDCTGCNL CVEVCPAKDR QNPEIKAINM MSRLEHVEEE 780
KINYDFFLNL PEIDRSKLER IDIRTSQLIT PLFEYSGACS GCGETPYIKL LTQLYGDRML 840
IANATGCSSI YGGNLPSTPY TTDANGRGPA WANSLFEDNA EFGLGFRLTV DQHRVRVLRL 900
LDQFADKIPA ELLTALKSDA TPEVRREQVA ALRQQLNDVA EAHELLRDAD ALVEKSIWLI 960
GGDGWAYDIG FGGLDHVLSL TENVNILVLD TQCYSNTGGQ ASKATPLGAV TKFGEHGKRK 1020
ARKDLGVSMM MYGHVYVAQI SLGAQLNQTV KAIQEAEAYP GPSLIIAYSP CEEHGYDLAL 1080
SHDQMRQLTA TGFWPLYRFD PRRADEGKLP LALDSRPPSE APEETLLHEQ RFRRLNSQQP 1140
EVAEQLWKDA AADLQKRYDF LAQMAGKAEK SNTD 1174 
Gene Ontology
 GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW.
 GO:0009055; F:electron carrier activity; IEA:InterPro.
 GO:0005506; F:iron ion binding; IEA:InterPro.
 GO:0016903; F:oxidoreductase activity, acting on the aldehyde or oxo group of donors; IEA:InterPro.
 GO:0030976; F:thiamine pyrophosphate binding; IEA:InterPro.
 GO:0022900; P:electron transport chain; IEA:UniProtKB-KW. 
Interpro
 IPR001450; 4Fe4S-bd_dom.
 IPR017896; 4Fe4S_Fe-S-bd.
 IPR017900; 4Fe4S_Fe_S_CS.
 IPR019456; Pyrv-flavodox_OxRtase_EKR.
 IPR019752; Pyrv/ketoisovalerate_OxRed_cat.
 IPR002880; Pyrv_Fd/Flavodoxin_OxRdtase_N.
 IPR011895; Pyrv_flavodox_OxRed.
 IPR002869; Pyrv_flavodox_OxRed_cen.
 IPR011766; TPP_enzyme-bd_C.
 IPR009014; Transketo_C/Pyr-ferredox_oxred.
 IPR015941; Transketolase-like_C. 
Pfam
 PF10371; EKR
 PF00037; Fer4
 PF01558; POR
 PF01855; POR_N
 PF02775; TPP_enzyme_C 
SMART
 SM00890; EKR 
PROSITE
 PS00198; 4FE4S_FER_1
 PS51379; 4FE4S_FER_2 
PRINTS