CPLM 1.0 - Compendium of Protein Lysine ModificationTag | Content |
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CPLM ID | CPLM-006358 | UniProt Accession | | Genbank Protein ID | | Genbank Nucleotide ID | | Protein Name | DNA replication licensing factor MCM7 | Protein Synonyms/Alias | CDC47 homolog; P1.1-MCM3 | Gene Name | MCM7 | Gene Synonyms/Alias | CDC47; MCM2 | Created Date | July 27, 2013 | Organism | Homo sapiens (Human) | NCBI Taxa ID | 9606 | Lysine Modification | Position | Peptide | Type | References |
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4 | ****MALKDYALEKE | ubiquitination | [1, 2, 3] | 10 | LKDYALEKEKVKKFL | ubiquitination | [1, 2, 3, 4, 5, 6] | 12 | DYALEKEKVKKFLQE | ubiquitination | [2] | 15 | LEKEKVKKFLQEFYQ | ubiquitination | [2, 3, 4, 6, 7, 8] | 28 | YQDDELGKKQFKYGN | acetylation | [3, 9] | 28 | YQDDELGKKQFKYGN | ubiquitination | [1, 2, 3, 4, 5, 6, 7, 8] | 29 | QDDELGKKQFKYGNQ | ubiquitination | [1, 2, 3, 4, 6, 7, 8, 10] | 32 | ELGKKQFKYGNQLVR | ubiquitination | [1, 2] | 75 | ENARRYAKLFADAVQ | ubiquitination | [1, 2, 3, 4, 5, 6, 7, 8, 11] | 89 | QELLPQYKEREVVNK | ubiquitination | [1, 2, 3, 4, 5, 6, 12] | 96 | KEREVVNKDVLDVYI | ubiquitination | [1, 2, 3] | 145 | FQGPSSNKPRVIREV | ubiquitination | [1, 2, 4, 6, 7, 8, 11, 13] | 159 | VRADSVGKLVTVRGI | ubiquitination | [1, 2, 4, 6] | 231 | TRGSRFIKFQEMKMQ | ubiquitination | [1, 2, 4, 7, 8, 12] | 236 | FIKFQEMKMQEHSDQ | ubiquitination | [1, 2, 4, 6] | 305 | LEAHRIVKMNKSEDD | ubiquitination | [2, 4, 5] | 308 | HRIVKMNKSEDDESG | ubiquitination | [1, 2, 3, 4, 5, 6] | 335 | AEEDFYEKLAASIAP | ubiquitination | [2, 4, 5] | 351 | IYGHEDVKKALLLLL | ubiquitination | [1, 4, 5, 6] | 352 | YGHEDVKKALLLLLV | ubiquitination | [2, 3] | 387 | MGDPGVAKSQLLSYI | ubiquitination | [2, 4, 5, 12, 13] | 449 | CCIDEFDKMAEADRT | methylation | [14] | 471 | QQTISIAKAGILTTL | ubiquitination | [2, 3, 4, 5, 6, 13] | 557 | QFEPLDMKLMRRYIA | ubiquitination | [1, 2, 3, 4, 5, 6, 7, 8, 12] | 569 | YIAMCREKQPMVPES | ubiquitination | [2, 3, 4, 6] | 596 | RREAWASKDATYTSA | ubiquitination | [1, 2, 3, 4, 5, 6, 7, 8] | 627 | RMVDVVEKEDVNEAI | ubiquitination | [1, 2, 3, 4, 5, 6] | 641 | IRLMEMSKDSLLGDK | ubiquitination | [1, 2, 3, 4, 5, 6] | 648 | KDSLLGDKGQTARTQ | ubiquitination | [1, 2, 3, 4, 5, 6, 7, 8, 13] |
| Reference | [1] Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. Udeshi ND, Mani DR, Eisenhaure T, Mertins P, Jaffe JD, Clauser KR, Hacohen N, Carr SA. Mol Cell Proteomics. 2012 May;11(5):148-59. [ PMID: 22505724] [2] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments. Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA. Mol Cell Proteomics. 2013 Mar;12(3):825-31. [ PMID: 23266961] [3] Integrated proteomic analysis of post-translational modifications by serial enrichment. Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA. Nat Methods. 2013 Jul;10(7):634-7. [ PMID: 23749302] [4] Systematic and quantitative assessment of the ubiquitin-modified proteome. Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP. Mol Cell. 2011 Oct 21;44(2):325-40. [ PMID: 21906983] [5] Global identification of modular cullin-RING ligase substrates. Emanuele MJ, Elia AE, Xu Q, Thoma CR, Izhar L, Leng Y, Guo A, Chen YN, Rush J, Hsu PW, Yen HC, Elledge SJ. Cell. 2011 Oct 14;147(2):459-74. [ PMID: 21963094] [6] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization. Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW. Nature. 2013 Apr 18;496(7445):372-6. [ PMID: 23503661] [7] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C. Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [ PMID: 21890473] [8] hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties. Chen Z, Zhou Y, Song J, Zhang Z. Biochim Biophys Acta. 2013 Aug;1834(8):1461-7. [ PMID: 23603789] [9] Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3. Sol EM, Wagner SA, Weinert BT, Kumar A, Kim HS, Deng CX, Choudhary C. PLoS One. 2012;7(12):e50545. [ PMID: 23236377] [10] Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. Danielsen JM, Sylvestersen KB, Bekker-Jensen S, Szklarczyk D, Poulsen JW, Horn H, Jensen LJ, Mailand N, Nielsen ML. Mol Cell Proteomics. 2011 Mar;10(3):M110.003590. [ PMID: 21139048] [11] Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling. Xu G, Paige JS, Jaffrey SR. Nat Biotechnol. 2010 Aug;28(8):868-73. [ PMID: 20639865] [12] Ubiquitin ligase substrate identification through quantitative proteomics at both the protein and peptide levels. Lee KA, Hammerle LP, Andrews PS, Stokes MP, Mustelin T, Silva JC, Black RA, Doedens JR. J Biol Chem. 2011 Dec 2;286(48):41530-8. [ PMID: 21987572] [13] Proteome-wide identification of ubiquitylation sites by conjugation of engineered lysine-less ubiquitin. Oshikawa K, Matsumoto M, Oyamada K, Nakayama KI. J Proteome Res. 2012 Feb 3;11(2):796-807. [ PMID: 22053931] [14] A general molecular affinity strategy for global detection and proteomic analysis of lysine methylation. Moore KE, Carlson SM, Camp ND, Cheung P, James RG, Chua KF, Wolf-Yadlin A, Gozani O. Mol Cell. 2013 May 9;50(3):444-56. [ PMID: 23583077] | Functional Description | Acts as component of the MCM2-7 complex (MCM complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the MCM2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity. Required for S-phase checkpoint activation upon UV-induced damage. | Sequence Annotation | DOMAIN 332 538 MCM. NP_BIND 381 388 ATP (Potential). REGION 521 564 Interaction with RAD17. REGION 577 719 Interaction with ATRIP. MOTIF 513 516 Arginine finger. MOD_RES 2 2 N-acetylalanine. MOD_RES 121 121 Phosphoserine. MOD_RES 365 365 Phosphoserine. MOD_RES 500 500 Phosphoserine. | Keyword | Acetylation; Alternative splicing; ATP-binding; Cell cycle; Complete proteome; Direct protein sequencing; DNA replication; DNA-binding; Glycoprotein; Helicase; Hydrolase; Nucleotide-binding; Nucleus; Phosphoprotein; Polymorphism; Reference proteome. | Sequence Source | UniProt (SWISSPROT/TrEMBL); GenBank; EMBL | Protein Length | 719 AA | Protein Sequence | MALKDYALEK EKVKKFLQEF YQDDELGKKQ FKYGNQLVRL AHREQVALYV DLDDVAEDDP 60 ELVDSICENA RRYAKLFADA VQELLPQYKE REVVNKDVLD VYIEHRLMME QRSRDPGMVR 120 SPQNQYPAEL MRRFELYFQG PSSNKPRVIR EVRADSVGKL VTVRGIVTRV SEVKPKMVVA 180 TYTCDQCGAE TYQPIQSPTF MPLIMCPSQE CQTNRSGGRL YLQTRGSRFI KFQEMKMQEH 240 SDQVPVGNIP RSITVLVEGE NTRIAQPGDH VSVTGIFLPI LRTGFRQVVQ GLLSETYLEA 300 HRIVKMNKSE DDESGAGELT REELRQIAEE DFYEKLAASI APEIYGHEDV KKALLLLLVG 360 GVDQSPRGMK IRGNINICLM GDPGVAKSQL LSYIDRLAPR SQYTTGRGSS GVGLTAAVLR 420 DSVSGELTLE GGALVLADQG VCCIDEFDKM AEADRTAIHE VMEQQTISIA KAGILTTLNA 480 RCSILAAANP AYGRYNPRRS LEQNIQLPAA LLSRFDLLWL IQDRPDRDND LRLAQHITYV 540 HQHSRQPPSQ FEPLDMKLMR RYIAMCREKQ PMVPESLADY ITAAYVEMRR EAWASKDATY 600 TSARTLLAIL RLSTALARLR MVDVVEKEDV NEAIRLMEMS KDSLLGDKGQ TARTQRPADV 660 IFATVRELVS GGRSVRFSEA EQRCVSRGFT PAQFQAALDE YEELNVWQVN ASRTRITFV 719 | Gene Ontology | GO:0000785; C:chromatin; TAS:ProtInc. GO:0005829; C:cytosol; IEA:Compara. GO:0042555; C:MCM complex; IDA:UniProtKB. GO:0005654; C:nucleoplasm; TAS:Reactome. GO:0005524; F:ATP binding; IEA:UniProtKB-KW. GO:0003678; F:DNA helicase activity; IEA:Compara. GO:0003697; F:single-stranded DNA binding; IEA:Compara. GO:0008283; P:cell proliferation; IEA:Compara. GO:0071364; P:cellular response to epidermal growth factor stimulus; IEA:Compara. GO:0006270; P:DNA replication initiation; IEA:InterPro. GO:0006271; P:DNA strand elongation involved in DNA replication; TAS:Reactome. GO:0006268; P:DNA unwinding involved in replication; IEA:Compara. GO:0000082; P:G1/S transition of mitotic cell cycle; TAS:Reactome. GO:0042325; P:regulation of phosphorylation; IMP:UniProtKB. GO:0006974; P:response to DNA damage stimulus; IMP:UniProtKB. GO:0042493; P:response to drug; IEA:Compara. | Interpro | | Pfam | | SMART | | PROSITE | | PRINTS | |
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