CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-006358
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 DNA replication licensing factor MCM7 
Protein Synonyms/Alias
 CDC47 homolog; P1.1-MCM3 
Gene Name
 MCM7 
Gene Synonyms/Alias
 CDC47; MCM2 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
4****MALKDYALEKEubiquitination[1, 2, 3]
10LKDYALEKEKVKKFLubiquitination[1, 2, 3, 4, 5, 6]
12DYALEKEKVKKFLQEubiquitination[2]
15LEKEKVKKFLQEFYQubiquitination[2, 3, 4, 6, 7, 8]
28YQDDELGKKQFKYGNacetylation[3, 9]
28YQDDELGKKQFKYGNubiquitination[1, 2, 3, 4, 5, 6, 7, 8]
29QDDELGKKQFKYGNQubiquitination[1, 2, 3, 4, 6, 7, 8, 10]
32ELGKKQFKYGNQLVRubiquitination[1, 2]
75ENARRYAKLFADAVQubiquitination[1, 2, 3, 4, 5, 6, 7, 8, 11]
89QELLPQYKEREVVNKubiquitination[1, 2, 3, 4, 5, 6, 12]
96KEREVVNKDVLDVYIubiquitination[1, 2, 3]
145FQGPSSNKPRVIREVubiquitination[1, 2, 4, 6, 7, 8, 11, 13]
159VRADSVGKLVTVRGIubiquitination[1, 2, 4, 6]
231TRGSRFIKFQEMKMQubiquitination[1, 2, 4, 7, 8, 12]
236FIKFQEMKMQEHSDQubiquitination[1, 2, 4, 6]
305LEAHRIVKMNKSEDDubiquitination[2, 4, 5]
308HRIVKMNKSEDDESGubiquitination[1, 2, 3, 4, 5, 6]
335AEEDFYEKLAASIAPubiquitination[2, 4, 5]
351IYGHEDVKKALLLLLubiquitination[1, 4, 5, 6]
352YGHEDVKKALLLLLVubiquitination[2, 3]
387MGDPGVAKSQLLSYIubiquitination[2, 4, 5, 12, 13]
449CCIDEFDKMAEADRTmethylation[14]
471QQTISIAKAGILTTLubiquitination[2, 3, 4, 5, 6, 13]
557QFEPLDMKLMRRYIAubiquitination[1, 2, 3, 4, 5, 6, 7, 8, 12]
569YIAMCREKQPMVPESubiquitination[2, 3, 4, 6]
596RREAWASKDATYTSAubiquitination[1, 2, 3, 4, 5, 6, 7, 8]
627RMVDVVEKEDVNEAIubiquitination[1, 2, 3, 4, 5, 6]
641IRLMEMSKDSLLGDKubiquitination[1, 2, 3, 4, 5, 6]
648KDSLLGDKGQTARTQubiquitination[1, 2, 3, 4, 5, 6, 7, 8, 13]
Reference
 [1] Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.
 Udeshi ND, Mani DR, Eisenhaure T, Mertins P, Jaffe JD, Clauser KR, Hacohen N, Carr SA.
 Mol Cell Proteomics. 2012 May;11(5):148-59. [PMID: 22505724]
 [2] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [3] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302]
 [4] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [5] Global identification of modular cullin-RING ligase substrates.
 Emanuele MJ, Elia AE, Xu Q, Thoma CR, Izhar L, Leng Y, Guo A, Chen YN, Rush J, Hsu PW, Yen HC, Elledge SJ.
 Cell. 2011 Oct 14;147(2):459-74. [PMID: 21963094]
 [6] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661]
 [7] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [8] hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties.
 Chen Z, Zhou Y, Song J, Zhang Z.
 Biochim Biophys Acta. 2013 Aug;1834(8):1461-7. [PMID: 23603789]
 [9] Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3.
 Sol EM, Wagner SA, Weinert BT, Kumar A, Kim HS, Deng CX, Choudhary C.
 PLoS One. 2012;7(12):e50545. [PMID: 23236377]
 [10] Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level.
 Danielsen JM, Sylvestersen KB, Bekker-Jensen S, Szklarczyk D, Poulsen JW, Horn H, Jensen LJ, Mailand N, Nielsen ML.
 Mol Cell Proteomics. 2011 Mar;10(3):M110.003590. [PMID: 21139048]
 [11] Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling.
 Xu G, Paige JS, Jaffrey SR.
 Nat Biotechnol. 2010 Aug;28(8):868-73. [PMID: 20639865]
 [12] Ubiquitin ligase substrate identification through quantitative proteomics at both the protein and peptide levels.
 Lee KA, Hammerle LP, Andrews PS, Stokes MP, Mustelin T, Silva JC, Black RA, Doedens JR.
 J Biol Chem. 2011 Dec 2;286(48):41530-8. [PMID: 21987572]
 [13] Proteome-wide identification of ubiquitylation sites by conjugation of engineered lysine-less ubiquitin.
 Oshikawa K, Matsumoto M, Oyamada K, Nakayama KI.
 J Proteome Res. 2012 Feb 3;11(2):796-807. [PMID: 22053931]
 [14] A general molecular affinity strategy for global detection and proteomic analysis of lysine methylation.
 Moore KE, Carlson SM, Camp ND, Cheung P, James RG, Chua KF, Wolf-Yadlin A, Gozani O.
 Mol Cell. 2013 May 9;50(3):444-56. [PMID: 23583077
Functional Description
 Acts as component of the MCM2-7 complex (MCM complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the MCM2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity. Required for S-phase checkpoint activation upon UV-induced damage. 
Sequence Annotation
 DOMAIN 332 538 MCM.
 NP_BIND 381 388 ATP (Potential).
 REGION 521 564 Interaction with RAD17.
 REGION 577 719 Interaction with ATRIP.
 MOTIF 513 516 Arginine finger.
 MOD_RES 2 2 N-acetylalanine.
 MOD_RES 121 121 Phosphoserine.
 MOD_RES 365 365 Phosphoserine.
 MOD_RES 500 500 Phosphoserine.  
Keyword
 Acetylation; Alternative splicing; ATP-binding; Cell cycle; Complete proteome; Direct protein sequencing; DNA replication; DNA-binding; Glycoprotein; Helicase; Hydrolase; Nucleotide-binding; Nucleus; Phosphoprotein; Polymorphism; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 719 AA 
Protein Sequence
MALKDYALEK EKVKKFLQEF YQDDELGKKQ FKYGNQLVRL AHREQVALYV DLDDVAEDDP 60
ELVDSICENA RRYAKLFADA VQELLPQYKE REVVNKDVLD VYIEHRLMME QRSRDPGMVR 120
SPQNQYPAEL MRRFELYFQG PSSNKPRVIR EVRADSVGKL VTVRGIVTRV SEVKPKMVVA 180
TYTCDQCGAE TYQPIQSPTF MPLIMCPSQE CQTNRSGGRL YLQTRGSRFI KFQEMKMQEH 240
SDQVPVGNIP RSITVLVEGE NTRIAQPGDH VSVTGIFLPI LRTGFRQVVQ GLLSETYLEA 300
HRIVKMNKSE DDESGAGELT REELRQIAEE DFYEKLAASI APEIYGHEDV KKALLLLLVG 360
GVDQSPRGMK IRGNINICLM GDPGVAKSQL LSYIDRLAPR SQYTTGRGSS GVGLTAAVLR 420
DSVSGELTLE GGALVLADQG VCCIDEFDKM AEADRTAIHE VMEQQTISIA KAGILTTLNA 480
RCSILAAANP AYGRYNPRRS LEQNIQLPAA LLSRFDLLWL IQDRPDRDND LRLAQHITYV 540
HQHSRQPPSQ FEPLDMKLMR RYIAMCREKQ PMVPESLADY ITAAYVEMRR EAWASKDATY 600
TSARTLLAIL RLSTALARLR MVDVVEKEDV NEAIRLMEMS KDSLLGDKGQ TARTQRPADV 660
IFATVRELVS GGRSVRFSEA EQRCVSRGFT PAQFQAALDE YEELNVWQVN ASRTRITFV 719 
Gene Ontology
 GO:0000785; C:chromatin; TAS:ProtInc.
 GO:0005829; C:cytosol; IEA:Compara.
 GO:0042555; C:MCM complex; IDA:UniProtKB.
 GO:0005654; C:nucleoplasm; TAS:Reactome.
 GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
 GO:0003678; F:DNA helicase activity; IEA:Compara.
 GO:0003697; F:single-stranded DNA binding; IEA:Compara.
 GO:0008283; P:cell proliferation; IEA:Compara.
 GO:0071364; P:cellular response to epidermal growth factor stimulus; IEA:Compara.
 GO:0006270; P:DNA replication initiation; IEA:InterPro.
 GO:0006271; P:DNA strand elongation involved in DNA replication; TAS:Reactome.
 GO:0006268; P:DNA unwinding involved in replication; IEA:Compara.
 GO:0000082; P:G1/S transition of mitotic cell cycle; TAS:Reactome.
 GO:0042325; P:regulation of phosphorylation; IMP:UniProtKB.
 GO:0006974; P:response to DNA damage stimulus; IMP:UniProtKB.
 GO:0042493; P:response to drug; IEA:Compara. 
Interpro
 IPR003593; AAA+_ATPase.
 IPR008050; MCM7.
 IPR018525; MCM_CS.
 IPR001208; MCM_DNA-dep_ATPase.
 IPR012340; NA-bd_OB-fold.
 IPR027417; P-loop_NTPase. 
Pfam
 PF00493; MCM 
SMART
 SM00382; AAA
 SM00350; MCM 
PROSITE
 PS00847; MCM_1
 PS50051; MCM_2 
PRINTS
 PR01657; MCMFAMILY.
 PR01663; MCMPROTEIN7.