CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-035497
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Protein Xpc 
Protein Synonyms/Alias
 Xeroderma pigmentosum, complementation group C (Predicted) 
Gene Name
 Xpc 
Gene Synonyms/Alias
 Xpc_predicted; rCG_56286 
Created Date
 July 27, 2013 
Organism
 Rattus norvegicus (Rat) 
NCBI Taxa ID
 10116 
Lysine Modification
Position
Peptide
Type
References
171IETPEQAKARERSEKubiquitination[1]
Reference
 [1] Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis.
 Na CH, Jones DR, Yang Y, Wang X, Xu Y, Peng J.
 J Proteome Res. 2012 Sep 7;11(9):4722-32. [PMID: 22871113] 
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 933 AA 
Protein Sequence
MARKRTAGGK RRKRGQEAED NKATRPEESD ADDFEDEKQK PPRKCFLPKV SQGKRKRDCS 60
DPGDPTNGAA KKKVAKATTK SKNLKAVKEE ALSDDGDDFR DSLSNCRKAK KHPKREVVDQ 120
GTDEDDSEDD WEEVEELTEP VLDMGENSAT SRSDLPVKAV EIEIETPEQA KARERSEKIK 180
MEFETYLRRM MKRFNKEVQE NMHKVHLLCL LASGFYRNSI CQQPDLLAIG LSIIPIRFTK 240
VPLQDRDVYY LSNLVKWFIG TFTVNADLSA SEQDSLQTTL ERRIAIYSAR DNEELVHIFL 300
LILRALQLLT RLVLSLQPIP LKSAVAKGKK SSKETSLEGP GDSSEPSSNI PESHNKPKTS 360
KRIKQEETLS EGSGKANARG KRGTATAGSR QQRKPSCSEG EEAKQEIQSH PQAQKRRVAA 420
KVSYKEESES DGAGSGSDFE LSSGEGQHSS DEDCKPGPRK QKRASAPQRS KAGSKSASKT 480
QSGSQWEPPS FSVASSSSSA CKRGKKISCG GEETDDRKAA GVDQWLEVFC EPQAKWVCVD 540
CVHGVVGQPV ACYKYATKPM TYVVGIDSDG WVRDVTQRYD PAWMTATRKC RVDAEWWAET 600
LRPYRSPLTE REKKEDQEFQ AKHLDQPLPT SISTYKNHPL YALKRHLLKF QAIYPESAAV 660
LGYCRGEAVY SRDCVHTLHS RDTWLKQARV VRLGEVPYKM VKGFSNRARK ARLSEPQLHD 720
HNDLGLFGHW QTEEYQPPVA VDGKVPRNEF GNVYLFLPSM MPIGCVQMNL PNLHRVARKL 780
GIDCVQAITG FDFHGGYCHP VTDGYVVCEE FRDVLLAAWE NEQALIEKKE KEKKEKRALG 840
NWKLLVRGLL IRERLKLRYG AKSEAAAPHA NAGGGLSSDE EEGTSSQAEA ARVLAASWPQ 900
NRETKEEQKP DYTKMTRRRR AAEASHLFPF EKL 933 
Gene Ontology
 GO:0005737; C:cytoplasm; IDA:RGD.
 GO:0005634; C:nucleus; IDA:RGD.
 GO:0071942; C:XPC complex; IEA:Compara.
 GO:0003684; F:damaged DNA binding; IEA:Compara.
 GO:0003697; F:single-stranded DNA binding; IEA:Compara.
 GO:0031573; P:intra-S DNA damage checkpoint; IEA:Compara.
 GO:0000715; P:nucleotide-excision repair, DNA damage recognition; IEA:Compara.
 GO:0042493; P:response to drug; IEP:RGD.
 GO:0010224; P:response to UV-B; IEA:Compara. 
Interpro
 IPR004583; DNA_repair_Rad4.
 IPR018026; DNA_repair_Rad4_subgr.
 IPR018325; Rad4/PNGase_transGLS-fold.
 IPR018326; Rad4_beta-hairpin_dom1.
 IPR018327; Rad4_beta-hairpin_dom2.
 IPR018328; Rad4_beta-hairpin_dom3. 
Pfam
 PF10403; BHD_1
 PF10404; BHD_2
 PF10405; BHD_3
 PF03835; Rad4 
SMART
 SM01030; BHD_1
 SM01031; BHD_2
 SM01032; BHD_3 
PROSITE
  
PRINTS