CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-008866
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Putative sigma L-dependent transcriptional regulator YqiR 
Protein Synonyms/Alias
  
Gene Name
 yqiR 
Gene Synonyms/Alias
 BSU24100 
Created Date
 July 27, 2013 
Organism
 Bacillus subtilis (strain 168) 
NCBI Taxa ID
 224308 
Lysine Modification
Position
Peptide
Type
References
279SEKEVIGKPANTDISacetylation[1]
Reference
 [1] The acetylproteome of Gram-positive model bacterium Bacillus subtilis.
 Kim D, Yu BJ, Kim JA, Lee YJ, Choi SG, Kang S, Pan JG.
 Proteomics. 2013 May;13(10-11):1726-36. [PMID: 23468065] 
Functional Description
  
Sequence Annotation
 DOMAIN 115 185 PAS 1.
 DOMAIN 234 305 PAS 2.
 DOMAIN 368 598 Sigma-54 factor interaction.
 NP_BIND 396 403 ATP (Potential).
 NP_BIND 460 469 ATP (Potential).
 DNA_BIND 663 682 H-T-H motif (By similarity).  
Keyword
 ATP-binding; Cell membrane; Complete proteome; DNA-binding; Membrane; Nucleotide-binding; Reference proteome; Repeat; Transcription; Transcription regulation; Transmembrane; Transmembrane helix; Two-component regulatory system. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 692 AA 
Protein Sequence
MQKVLIVGAG KRGTALLHIL IKTAIIDIIA VVDKDPEAPG LKEAEQYGIA VSSDWKPYIQ 60
QKPDIVIHTT GDQAVFDELL QRKHEDTIVM PGKMAYIVFQ LMEEKQHLIQ MLKEQTYKYD 120
RIFNSTHDGM IFIDINEEII LFNHMAEKMV GKKREEVIGR PIKEVIPSTK MPRILKTRVP 180
EYNQKQLLGD HLQIVTTRLP IIDEGGRLLG ALCVFKDITD AVELAEEVTN LKQVRTMLEA 240
IIQSSDEAIS VVDENGIGLL INKAYTKMTG LSEKEVIGKP ANTDISEGES MHLKVLETRR 300
PVRGVRMKVG PNEKEVIVNV APVIVDGILK GSVGVIHDVS EIKMLTAELN RARQIIRTLE 360
AKYTFDDIIG KSEQMLVALE QAKLGAKTPA TILLRGESGT GKELFAHAIH NESDRKYNKF 420
IRVNCAALSE NLLESELFGY EDGAFSGAKR GGKKGLFEEA NNGSIFLDEI GELTQNMQAK 480
LLRVLQEKEI VRVGGTKAIP VNVRVIAATN VNIEKAMADG TFREDLYYRI NRYPISIPPL 540
RQRLEDIEAL SVRLIQKINR DYGRNVKGLS QQALRALSAY HWPGNVRELE NVLGRAMIFL 600
NPHMEWIEKD HLPVFELEQK ENDTDQGTGF DFPDIEGEKL SVAVEKFEAH LIQQTLEKHH 660
FNRTKTAKAL GVSIRNLYYK MDKYGLANEG MQ 692 
Gene Ontology
 GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
 GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
 GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
 GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
 GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
 GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.
 GO:0004871; F:signal transducer activity; IEA:InterPro.
 GO:0000160; P:phosphorelay signal transduction system; IEA:UniProtKB-KW.
 GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. 
Interpro
 IPR003593; AAA+_ATPase.
 IPR009057; Homeodomain-like.
 IPR002197; HTH_Fis.
 IPR016040; NAD(P)-bd_dom.
 IPR027417; P-loop_NTPase.
 IPR001610; PAC.
 IPR000014; PAS.
 IPR013767; PAS_fold.
 IPR002078; Sigma_54_int.
 IPR025662; Sigma_54_int_dom_ATP-bd_1.
 IPR025943; Sigma_54_int_dom_ATP-bd_2.
 IPR025944; Sigma_54_int_dom_CS. 
Pfam
 PF02954; HTH_8
 PF00989; PAS
 PF00158; Sigma54_activat 
SMART
 SM00382; AAA
 SM00086; PAC
 SM00091; PAS 
PROSITE
 PS50112; PAS
 PS00675; SIGMA54_INTERACT_1
 PS00676; SIGMA54_INTERACT_2
 PS00688; SIGMA54_INTERACT_3
 PS50045; SIGMA54_INTERACT_4 
PRINTS
 PR01590; HTHFIS.