CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-008999
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Small ubiquitin-related modifier 3 
Protein Synonyms/Alias
 SUMO-3; SMT3 homolog 1; SUMO-2; Ubiquitin-like protein SMT3B; Smt3B 
Gene Name
 SUMO3 
Gene Synonyms/Alias
 SMT3B; SMT3H1 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
5***MSEEKPKEGVKTsumoylation[1]
11EKPKEGVKTENDHINacetylation[2]
11EKPKEGVKTENDHINsumoylation[1, 3, 4]
11EKPKEGVKTENDHINubiquitination[5, 6]
41KRHTPLSKLMKAYCEacetylation[2]
41KRHTPLSKLMKAYCEsumoylation[4]
44TPLSKLMKAYCERQGacetylation[2]
Reference
 [1] Targeted identification of SUMOylation sites in human proteins using affinity enrichment and paralog-specific reporter ions.
 Lamoliatte F, Bonneil E, Durette C, Caron-Lizotte O, Wildemann D, Zerweck J, Wenschuh H, Thibault P.
 Mol Cell Proteomics. 2013 Jun 7;. [PMID: 23750026]
 [2] Lysine acetylation targets protein complexes and co-regulates major cellular functions.
 Choudhary C, Kumar C, Gnad F, Nielsen ML, Rehman M, Walther TC, Olsen JV, Mann M.
 Science. 2009 Aug 14;325(5942):834-40. [PMID: 19608861]
 [3] Positive and negative regulation of APP amyloidogenesis by sumoylation.
 Li Y, Wang H, Wang S, Quon D, Liu YW, Cordell B.
 Proc Natl Acad Sci U S A. 2003 Jan 7;100(1):259-64. [PMID: 12506199]
 [4] A novel proteomics approach to identify SUMOylated proteins and their modification sites in human cells.
 Galisson F, Mahrouche L, Courcelles M, Bonneil E, Meloche S, Chelbi-Alix MK, Thibault P.
 Mol Cell Proteomics. 2011 Feb;10(2):M110.004796. [PMID: 21098080]
 [5] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [6] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661
Functional Description
 Ubiquitin-like protein which can be covalently attached to target lysines either as a monomer or as a lysine-linked polymer. Does not seem to be involved in protein degradation and may function as an antagonist of ubiquitin in the degradation process. Plays a role in a number of cellular processes such as nuclear transport, DNA replication and repair, mitosis and signal transduction. Covalent attachment to its substrates requires prior activation by the E1 complex SAE1-SAE2 and linkage to the E2 enzyme UBE2I, and can be promoted by an E3 ligase such as PIAS1-4, RANBP2 or CBX4. 
Sequence Annotation
 DOMAIN 15 92 Ubiquitin-like.
 CROSSLNK 11 11 Glycyl lysine isopeptide (Lys-Gly)
 CROSSLNK 92 92 Glycyl lysine isopeptide (Gly-Lys)  
Keyword
 3D-structure; Complete proteome; Cytoplasm; Isopeptide bond; Polymorphism; Reference proteome; Ubl conjugation; Ubl conjugation pathway. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 103 AA 
Protein Sequence
MSEEKPKEGV KTENDHINLK VAGQDGSVVQ FKIKRHTPLS KLMKAYCERQ GLSMRQIRFR 60
FDGQPINETD TPAQLEMEDE DTIDVFQQQT GGVPESSLAG HSF 103 
Gene Ontology
 GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
 GO:0000776; C:kinetochore; TAS:ProtInc.
 GO:0005634; C:nucleus; IEA:InterPro.
 GO:0016925; P:protein sumoylation; IDA:UniProtKB. 
Interpro
 IPR022617; SUMO.
 IPR027218; SUMO_chordates.
 IPR000626; Ubiquitin.
 IPR019955; Ubiquitin_supergroup. 
Pfam
 PF11976; Rad60-SLD 
SMART
 SM00213; UBQ 
PROSITE
 PS50053; UBIQUITIN_2 
PRINTS