CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-016448
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Ras-related protein Rab-39A 
Protein Synonyms/Alias
 Rab-39 
Gene Name
 Rab39a 
Gene Synonyms/Alias
 Rab39 
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
63IEPGKRIKLQLWDTAacetylation[1]
63IEPGKRIKLQLWDTAubiquitination[2]
Reference
 [1] Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3.
 Sol EM, Wagner SA, Weinert BT, Kumar A, Kim HS, Deng CX, Choudhary C.
 PLoS One. 2012;7(12):e50545. [PMID: 23236377]
 [2] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023
Functional Description
 Plays a role in the maturation and acidification of phagosomes that engulf pathogens, such as S.aureus and M.tuberculosis. Plays a role in vesicular trafficking. Plays a role in the fusion of phagosomes with lysosomes (By similarity). 
Sequence Annotation
 NP_BIND 15 22 GTP (By similarity).
 NP_BIND 68 72 GTP (By similarity).
 NP_BIND 127 130 GTP (By similarity).
 MOTIF 41 49 Effector region (By similarity).
 MOD_RES 217 217 Cysteine methyl ester (By similarity).
 LIPID 215 215 S-geranylgeranyl cysteine (By
 LIPID 217 217 S-geranylgeranyl cysteine (By  
Keyword
 Cell membrane; Complete proteome; Cytoplasmic vesicle; GTP-binding; Lipoprotein; Membrane; Methylation; Nucleotide-binding; Prenylation; Protein transport; Reference proteome; Transport. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 217 AA 
Protein Sequence
METIWIYQFR LIVIGDSTVG KSCLLHRFTQ GRFPGLHSPA CDPTVGVDFF SRLLEIEPGK 60
RIKLQLWDTA GQERFRSITR SYYRNSVGGF LVFDITNRRS FEHVKDWLEE AKMHVQPFQI 120
VFLLVGHKCD LASQRQVSRE EAERLSTDCG MKYIETSAKD ATNVEESFTI LTRDIYELIK 180
KGEICIQDGW EGVKSGFVPN TVHSSEEAVK PRKECFC 217 
Gene Ontology
 GO:0045335; C:phagocytic vesicle; ISS:UniProtKB.
 GO:0030670; C:phagocytic vesicle membrane; IEA:UniProtKB-SubCell.
 GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
 GO:0005525; F:GTP binding; IEA:UniProtKB-KW.
 GO:0090383; P:phagosome acidification; ISS:UniProtKB.
 GO:0090385; P:phagosome-lysosome fusion; ISS:UniProtKB.
 GO:0015031; P:protein transport; IEA:UniProtKB-KW.
 GO:0007264; P:small GTPase mediated signal transduction; IEA:InterPro. 
Interpro
 IPR027417; P-loop_NTPase.
 IPR005225; Small_GTP-bd_dom.
 IPR001806; Small_GTPase.
 IPR003579; Small_GTPase_Rab_type. 
Pfam
 PF00071; Ras 
SMART
 SM00175; RAB 
PROSITE
 PS51419; RAB 
PRINTS
 PR00449; RASTRNSFRMNG.