CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-005580
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 50S ribosomal protein L16 arginine hydroxylase 
Protein Synonyms/Alias
 Ribosomal oxygenase YcfD; ROX 
Gene Name
 ycfD 
Gene Synonyms/Alias
 b1128; JW1114 
Created Date
 July 27, 2013 
Organism
 Escherichia coli (strain K12) 
NCBI Taxa ID
 83333 
Lysine Modification
Position
Peptide
Type
References
147RRWRVGEKLQMKQHCacetylation[1]
249VLPQEMDKLREMMLEacetylation[1]
298DEIYDALKQGEVLVRacetylation[1]
Reference
 [1] Acetyl-Phosphate Is a Critical Determinant of Lysine Acetylation in E. coli.
 Weinert BT, Iesmantavicius V, Wagner SA, Schölz C, Gummesson B, Beli P, Nyström T, Choudhary C.
 Mol Cell. 2013 Jul 25;51(2):265-72. [PMID: 23830618
Functional Description
 Growth-regulating oxygenase that catalyzes the hydroxylation of 50S ribosomal protein L16 on 'Arg-81'. 
Sequence Annotation
 DOMAIN 92 219 JmjC.
 METAL 125 125 Iron; catalytic (By similarity).
 METAL 127 127 Iron; catalytic (By similarity).
 METAL 187 187 Iron; catalytic (By similarity).  
Keyword
 Complete proteome; Dioxygenase; Iron; Metal-binding; Oxidoreductase; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 373 AA 
Protein Sequence
MEYQLTLNWP DFLERHWQKR PVVLKRGFNN FIDPISPDEL AGLAMESEVD SRLVSHQDGK 60
WQVSHGPFES YDHLGETNWS LLVQAVNHWH EPTAALMRPF RELPDWRIDD LMISFSVPGG 120
GVGPHLDQYD VFIIQGTGRR RWRVGEKLQM KQHCPHPDLL QVDPFEAIID EELEPGDILY 180
IPPGFPHEGY ALENAMNYSV GFRAPNTREL ISGFADYVLQ RELGGNYYSD PDVPPRAHPA 240
DVLPQEMDKL REMMLELINQ PEHFKQWFGE FISQSRHELD IAPPEPPYQP DEIYDALKQG 300
EVLVRLGGLR VLRIGDDVYA NGEKIDSPHR PALDALASNI ALTAENFGDA LEDPSFLAML 360
AALVNSGYWF FEG 373 
Gene Ontology
 GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
 GO:0016702; F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen; IEA:UniProtKB-KW. 
Interpro
 IPR003347; JmjC_dom.
 IPR013109; NO66/MINA. 
Pfam
 PF08007; Cupin_4 
SMART
 SM00558; JmjC 
PROSITE
 PS51184; JMJC 
PRINTS