CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-009569
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Ras-related protein Rab-1A 
Protein Synonyms/Alias
 YPT1-related protein 
Gene Name
 Rab1A 
Gene Synonyms/Alias
 Rab1 
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
24IGDSGVGKSCLLLRFacetylation[1]
58RTIELDGKTIKLQIWacetylation[2]
58RTIELDGKTIKLQIWubiquitination[3]
61ELDGKTIKLQIWDTAacetylation[2, 4]
61ELDGKTIKLQIWDTAubiquitination[3]
119YASENVNKLLVGNKCacetylation[1]
119YASENVNKLLVGNKCubiquitination[3]
125NKLLVGNKCDLTTKKubiquitination[3]
131NKCDLTTKKVVDYTTubiquitination[3]
187ATAGGAEKSNVKIQSacetylation[4]
187ATAGGAEKSNVKIQSsuccinylation[4]
187ATAGGAEKSNVKIQSubiquitination[3]
191GAEKSNVKIQSTPVKubiquitination[3]
Reference
 [1] Quantitative acetylome analysis reveals the roles of SIRT1 in regulating diverse substrates and cellular pathways.
 Chen Y, Zhao W, Yang JS, Cheng Z, Luo H, Lu Z, Tan M, Gu W, Zhao Y.
 Mol Cell Proteomics. 2012 Oct;11(10):1048-62. [PMID: 22826441]
 [2] Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3.
 Sol EM, Wagner SA, Weinert BT, Kumar A, Kim HS, Deng CX, Choudhary C.
 PLoS One. 2012;7(12):e50545. [PMID: 23236377]
 [3] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023]
 [4] SIRT5-Mediated Lysine Desuccinylation Impacts Diverse Metabolic Pathways.
 Park J, Chen Y, Tishkoff DX, Peng C, Tan M, Dai L, Xie Z, Zhang Y, Zwaans BM, Skinner ME, Lombard DB, Zhao Y.
 Mol Cell. 2013 Jun 27;50(6):919-30. [PMID: 23806337
Functional Description
 Probably required for transit of protein from the ER through Golgi compartment. Binds GTP and GDP and possesses intrinsic GTPase activity. 
Sequence Annotation
 NP_BIND 18 26 GTP (By similarity).
 NP_BIND 66 70 GTP (By similarity).
 NP_BIND 124 127 GTP (By similarity).
 NP_BIND 154 156 GTP (By similarity).
 MOTIF 40 48 Effector region (By similarity).
 MOD_RES 2 2 N-acetylserine (By similarity).
 MOD_RES 79 79 O-(2-cholinephosphoryl)serine (By
 MOD_RES 194 194 Phosphoserine; by CDK1 (By similarity).
 LIPID 204 204 S-geranylgeranyl cysteine (By
 LIPID 205 205 S-geranylgeranyl cysteine (By  
Keyword
 Acetylation; Complete proteome; Direct protein sequencing; Endoplasmic reticulum; ER-Golgi transport; Golgi apparatus; GTP-binding; Lipoprotein; Nucleotide-binding; Phosphoprotein; Prenylation; Protein transport; Reference proteome; Transport. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 205 AA 
Protein Sequence
MSSMNPEYDY LFKLLLIGDS GVGKSCLLLR FADDTYTESY ISTIGVDFKI RTIELDGKTI 60
KLQIWDTAGQ ERFRTITSSY YRGAHGIIVV YDVTDQESFN NVKQWLQEID RYASENVNKL 120
LVGNKCDLTT KKVVDYTTAK EFADSLGIPF LETSAKNATN VEQSFMTMAA EIKKRMGPGA 180
TAGGAEKSNV KIQSTPVKQS GGGCC 205 
Gene Ontology
 GO:0005783; C:endoplasmic reticulum; IEA:UniProtKB-SubCell.
 GO:0005794; C:Golgi apparatus; IDA:MGI.
 GO:0005525; F:GTP binding; IEA:UniProtKB-KW.
 GO:0006888; P:ER to Golgi vesicle-mediated transport; ISA:MGI.
 GO:0006886; P:intracellular protein transport; TAS:MGI.
 GO:0007264; P:small GTPase mediated signal transduction; IEA:InterPro. 
Interpro
 IPR027417; P-loop_NTPase.
 IPR005225; Small_GTP-bd_dom.
 IPR001806; Small_GTPase.
 IPR003579; Small_GTPase_Rab_type. 
Pfam
 PF00071; Ras 
SMART
 SM00175; RAB 
PROSITE
 PS51419; RAB 
PRINTS
 PR00449; RASTRNSFRMNG.