CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-030805
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Catenin beta-1 
Protein Synonyms/Alias
 cDNA FLJ57878, highly similar to Beta-catenin 
Gene Name
 CTNNB1 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
12MAMEPDRKAAVSHWQubiquitination[1, 2, 3, 4, 5]
126AEPSQMLKHAVVNLIacetylation[6]
126AEPSQMLKHAVVNLIubiquitination[2, 3, 4, 5, 7]
151RAIPELTKLLNDEDQubiquitination[1, 2, 3, 4, 5]
163EDQVVVNKAAVMVHQubiquitination[1, 2, 3, 4, 5, 8]
173VMVHQLSKKEASRHAubiquitination[3, 5]
174MVHQLSKKEASRHAIubiquitination[4]
226EGLLAIFKSGGIPALubiquitination[1, 2, 3, 5]
274RLAGGLQKMVALLNKubiquitination[5]
328MRTYTYEKLLWTTSRubiquitination[1, 2, 3, 5]
338WTTSRVLKVLSVCSSubiquitination[3, 4]
347LSVCSSNKPAIVEAGubiquitination[2, 3, 4, 9]
428TCNNYKNKMMVCQVGubiquitination[3, 4, 5, 8]
489YGLPVVVKLLHPPSHubiquitination[3]
501PSHWPLIKATVGLIRubiquitination[2, 3, 4, 5, 8, 9]
618LCELAQDKEAAEAIEubiquitination[2]
664EDKPQDYKKRLSVELubiquitination[2, 3]
Reference
 [1] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [2] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [3] Global identification of modular cullin-RING ligase substrates.
 Emanuele MJ, Elia AE, Xu Q, Thoma CR, Izhar L, Leng Y, Guo A, Chen YN, Rush J, Hsu PW, Yen HC, Elledge SJ.
 Cell. 2011 Oct 14;147(2):459-74. [PMID: 21963094]
 [4] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [5] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661]
 [6] Monoclonal antibody cocktail as an enrichment tool for acetylome analysis.
 Shaw PG, Chaerkady R, Zhang Z, Davidson NE, Pandey A.
 Anal Chem. 2011 May 15;83(10):3623-6. [PMID: 21466224]
 [7] Proteome-wide identification of ubiquitylation sites by conjugation of engineered lysine-less ubiquitin.
 Oshikawa K, Matsumoto M, Oyamada K, Nakayama KI.
 J Proteome Res. 2012 Feb 3;11(2):796-807. [PMID: 22053931]
 [8] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302]
 [9] A data set of human endogenous protein ubiquitination sites.
 Shi Y, Chan DW, Jung SY, Malovannaya A, Wang Y, Qin J.
 Mol Cell Proteomics. 2011 May;10(5):M110.002089. [PMID: 20972266
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 774 AA 
Protein Sequence
MELDMAMEPD RKAAVSHWQQ QSYLDSGIHS GATTTAPSLS GKGNPEEEDV DTSQVLYEWE 60
QGFSQSFTQE QVADIDGQYA MTRAQRVRAA MFPETLDEGM QIPSTQFDAA HPTNVQRLAE 120
PSQMLKHAVV NLINYQDDAE LATRAIPELT KLLNDEDQVV VNKAAVMVHQ LSKKEASRHA 180
IMRSPQMVSA IVRTMQNTND VETARCTAGT LHNLSHHREG LLAIFKSGGI PALVKMLGSP 240
VDSVLFYAIT TLHNLLLHQE GAKMAVRLAG GLQKMVALLN KTNVKFLAIT TDCLQILAYG 300
NQESKLIILA SGGPQALVNI MRTYTYEKLL WTTSRVLKVL SVCSSNKPAI VEAGGMQALG 360
LHLTDPSQRL VQNCLWTLRN LSDAATKQEG MEGLLGTLVQ LLGSDDINVV TCAAGILSNL 420
TCNNYKNKMM VCQVGGIEAL VRTVLRAGDR EDITEPAICA LRHLTSRHQE AEMAQNAVRL 480
HYGLPVVVKL LHPPSHWPLI KATVGLIRNL ALCPANHAPL REQGAIPRLV QLLVRAHQDT 540
QRRTSMGGTQ QQFVEGVRME EIVEGCTGAL HILARDVHNR IVIRGLNTIP LFVQLLYSPI 600
ENIQRVAAGV LCELAQDKEA AEAIEAEGAT APLTELLHSR NEGVATYAAA VLFRMSEDKP 660
QDYKKRLSVE LTSSLFRTEP MAWNETADLG LDIGAQGEPL GYRQDDPSYR SFHSGGYGQD 720
ALGMDPMMEH EMGGHHPGAD YPVDGLPDLG HAQDLMDGLP PGDSNQLAWF DTDL 774 
Gene Ontology
 GO:0043296; C:apical junction complex; IEA:Compara.
 GO:0045177; C:apical part of cell; IEA:Compara.
 GO:0016323; C:basolateral plasma membrane; IEA:Compara.
 GO:0071664; C:catenin-TCF7L2 complex; IEA:Compara.
 GO:0005813; C:centrosome; IEA:Compara.
 GO:0005829; C:cytosol; IEA:Compara.
 GO:0043198; C:dendritic shaft; IEA:Compara.
 GO:0005916; C:fascia adherens; IEA:Compara.
 GO:0030027; C:lamellipodium; IEA:Compara.
 GO:0016328; C:lateral plasma membrane; IEA:Compara.
 GO:0031528; C:microvillus membrane; IEA:Compara.
 GO:0005886; C:plasma membrane; IDA:HPA.
 GO:0034750; C:Scrib-APC-beta-catenin complex; IEA:Compara.
 GO:0045202; C:synapse; IEA:Compara.
 GO:0005667; C:transcription factor complex; IEA:Compara.
 GO:0030018; C:Z disc; IEA:Compara.
 GO:0003682; F:chromatin binding; IEA:Compara.
 GO:0003690; F:double-stranded DNA binding; IEA:Compara.
 GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:Compara.
 GO:0003713; F:transcription coactivator activity; IEA:Compara.
 GO:0044212; F:transcription regulatory region DNA binding; IEA:Compara.
 GO:0009948; P:anterior/posterior axis specification; IEA:Compara.
 GO:0006915; P:apoptotic process; IEA:Compara.
 GO:0045453; P:bone resorption; IEA:Compara.
 GO:0001658; P:branching involved in ureteric bud morphogenesis; IEA:Compara.
 GO:0061324; P:canonical Wnt receptor signaling pathway involved in positive regulation of cardiac outflow tract cell proliferation; IEA:Compara.
 GO:0001708; P:cell fate specification; IEA:Compara.
 GO:0048469; P:cell maturation; IEA:Compara.
 GO:0016337; P:cell-cell adhesion; IEA:Compara.
 GO:0007160; P:cell-matrix adhesion; IEA:Compara.
 GO:0034613; P:cellular protein localization; IEA:Compara.
 GO:0071407; P:cellular response to organic cyclic compound; IEA:Compara.
 GO:0022009; P:central nervous system vasculogenesis; IEA:Compara.
 GO:0009950; P:dorsal/ventral axis specification; IEA:Compara.
 GO:0007398; P:ectoderm development; IEA:Compara.
 GO:0000578; P:embryonic axis specification; IEA:Compara.
 GO:0042733; P:embryonic digit morphogenesis; IEA:Compara.
 GO:0048617; P:embryonic foregut morphogenesis; IEA:Compara.
 GO:0035115; P:embryonic forelimb morphogenesis; IEA:Compara.
 GO:0035050; P:embryonic heart tube development; IEA:Compara.
 GO:0035116; P:embryonic hindlimb morphogenesis; IEA:Compara.
 GO:0036023; P:embryonic skeletal limb joint morphogenesis; IEA:Compara.
 GO:0001711; P:endodermal cell fate commitment; IEA:Compara.
 GO:0060742; P:epithelial cell differentiation involved in prostate gland development; IEA:Compara.
 GO:0060441; P:epithelial tube branching involved in lung morphogenesis; IEA:Compara.
 GO:0030900; P:forebrain development; IEA:Compara.
 GO:0061198; P:fungiform papilla formation; IEA:Compara.
 GO:0001702; P:gastrulation with mouth forming second; IEA:Compara.
 GO:0035112; P:genitalia morphogenesis; IEA:Compara.
 GO:0007403; P:glial cell fate determination; IEA:Compara.
 GO:0031069; P:hair follicle morphogenesis; IEA:Compara.
 GO:0060789; P:hair follicle placode formation; IEA:Compara.
 GO:0001701; P:in utero embryonic development; IEA:Compara.
 GO:0002089; P:lens morphogenesis in camera-type eye; IEA:Compara.
 GO:0001889; P:liver development; IEA:Compara.
 GO:0060479; P:lung cell differentiation; IEA:Compara.
 GO:0060492; P:lung induction; IEA:Compara.
 GO:0060484; P:lung-associated mesenchyme development; IEA:Compara.
 GO:0030539; P:male genitalia development; IEA:Compara.
 GO:0060916; P:mesenchymal cell proliferation involved in lung development; IEA:Compara.
 GO:0003337; P:mesenchymal to epithelial transition involved in metanephros morphogenesis; IEA:Compara.
 GO:0007494; P:midgut development; IEA:Compara.
 GO:0045445; P:myoblast differentiation; IEA:Compara.
 GO:0043066; P:negative regulation of apoptotic process; IEA:Compara.
 GO:0032331; P:negative regulation of chondrocyte differentiation; IEA:Compara.
 GO:0048715; P:negative regulation of oligodendrocyte differentiation; IEA:Compara.
 GO:0045671; P:negative regulation of osteoclast differentiation; IEA:Compara.
 GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IEA:Compara.
 GO:0072079; P:nephron tubule formation; IEA:Compara.
 GO:0001840; P:neural plate development; IEA:Compara.
 GO:0001764; P:neuron migration; IEA:Compara.
 GO:0042475; P:odontogenesis of dentin-containing tooth; IEA:Compara.
 GO:0048599; P:oocyte development; IEA:Compara.
 GO:0030316; P:osteoclast differentiation; IEA:Compara.
 GO:0060066; P:oviduct development; IEA:Compara.
 GO:0031016; P:pancreas development; IEA:Compara.
 GO:0001569; P:patterning of blood vessels; IEA:Compara.
 GO:0061047; P:positive regulation of branching involved in lung morphogenesis; IEA:Compara.
 GO:2000017; P:positive regulation of determination of dorsal identity; IEA:Compara.
 GO:0045603; P:positive regulation of endothelial cell differentiation; IEA:Compara.
 GO:0060769; P:positive regulation of epithelial cell proliferation involved in prostate gland development; IEA:Compara.
 GO:0045743; P:positive regulation of fibroblast growth factor receptor signaling pathway; IEA:Compara.
 GO:0043123; P:positive regulation of I-kappaB kinase/NF-kappaB cascade; IEA:Compara.
 GO:0043410; P:positive regulation of MAPK cascade; IEA:Compara.
 GO:0002053; P:positive regulation of mesenchymal cell proliferation; IEA:Compara.
 GO:0002052; P:positive regulation of neuroblast proliferation; IEA:Compara.
 GO:0045669; P:positive regulation of osteoblast differentiation; IEA:Compara.
 GO:0045893; P:positive regulation of transcription, DNA-dependent; IEA:Compara.
 GO:0051291; P:protein heterooligomerization; IEA:Compara.
 GO:0009954; P:proximal/distal pattern formation; IEA:Compara.
 GO:0070602; P:regulation of centromeric sister chromatid cohesion; IEA:Compara.
 GO:0031641; P:regulation of myelination; IEA:Compara.
 GO:0072182; P:regulation of nephron tubule epithelial cell differentiation; IEA:Compara.
 GO:0003266; P:regulation of secondary heart field cardioblast proliferation; IEA:Compara.
 GO:0042129; P:regulation of T cell proliferation; IEA:Compara.
 GO:0072053; P:renal inner medulla development; IEA:Compara.
 GO:0072054; P:renal outer medulla development; IEA:Compara.
 GO:0072033; P:renal vesicle formation; IEA:Compara.
 GO:0046686; P:response to cadmium ion; IEA:Compara.
 GO:0034097; P:response to cytokine stimulus; IEA:Compara.
 GO:0043627; P:response to estrogen stimulus; IEA:Compara.
 GO:0014010; P:Schwann cell proliferation; IEA:Compara.
 GO:0043588; P:skin development; IEA:Compara.
 GO:0051145; P:smooth muscle cell differentiation; IEA:Compara.
 GO:0050808; P:synapse organization; IEA:Compara.
 GO:0048489; P:synaptic vesicle transport; IEA:Compara.
 GO:0033077; P:T cell differentiation in thymus; IEA:Compara.
 GO:0048538; P:thymus development; IEA:Compara.
 GO:0060440; P:trachea formation; IEA:Compara. 
Interpro
 IPR011989; ARM-like.
 IPR016024; ARM-type_fold.
 IPR000225; Armadillo.
 IPR013284; Beta-catenin. 
Pfam
 PF00514; Arm 
SMART
 SM00185; ARM 
PROSITE
 PS50176; ARM_REPEAT 
PRINTS
 PR01869; BCATNINFAMLY.