CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-039757
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 Lysine-specific demethylase 3A 
Protein Synonyms/Alias
  
Gene Name
 KDM3A 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
116TDNQIVSKEFQALIVubiquitination[1]
639CVDCYRMKRKNCQQGubiquitination[2]
696VRAKWGIKANCPCSNubiquitination[1]
799PILKNEIKCLPPLPPubiquitination[1, 3, 4]
843LLNSSTGKTENGLKNubiquitination[1, 2, 4]
853NGLKNTPKILDDIFAubiquitination[1, 3]
866FASLVQNKTTSDLSKubiquitination[1, 2, 5]
908CLQDPNNKSNWNVFRubiquitination[1]
945WKPESFRKEFGEQEVubiquitination[1]
1028EYTRRDGKLNLASRLubiquitination[1]
1109DSDELTIKRFIEGKEubiquitination[1, 2, 5]
1117RFIEGKEKPGALWHIubiquitination[1]
1219FVSPEHVKHCFWLTQubiquitination[1]
1268ASESSFGKP******ubiquitination[1]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [2] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [3] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [4] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302]
 [5] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 1269 AA 
Protein Sequence
MVLTLGESWP VLVGRRFLSL SAADGSDGSH DSWDVERVAE WPWLSGTIRA VSHTDVTKKD 60
LKTYKPLLDK AGLGSITSVR FLGDQQRVFL SKDLLKPIQD VNSLRLSLTD NQIVSKEFQA 120
LIVKHLDESH LLKGDKNLVG SEVKIYSLDP STQWFSATVI NGNPASKTLQ VNCEEIPALK 180
IVDPSLIHVE VVHDNLVTCG NSARIGAVKR KSSENNGTLV SKQAKSCSEA SPSMCPVQSV 240
PTTVFKEILL GCTAATPPSK DPRQQSTPQA ANSPPNLGAK IPQGCHKQSL PEEISSCLNT 300
KSEALRTKPD VCKAGLLSKS SQIGTGDLKI LTEPKGSCTQ PKTNTDQENR LESVPQALTG 360
LPKECLPTKA SSKAELEIAN PPELQKHLEH APSPSDVSNA PEVKAGVNSD SPNNCSGKKV 420
EPSALACRSQ NLKESSVKVD NESCCSRSNN KIQNAPSRKS VLTDPAKLKK LQQSGEAFVQ 480
DDSCVNIVAQ LPKCRECRLD SLRKDKEQQK DSPVFCRFFH FRRLQFNKHG VLRVEGFLTP 540
NKYDNEAIGL WLPLTKNVVG IDLDTAKYIL ANIGDHFCQM VISEKEAMST IEPHRQVAWK 600
RAVKGVREMC DVCDTTIFNL HWVCPRCGFG VCVDCYRMKR KNCQQGAAYK TFSWLKCVKS 660
QIHEPENLMP TQIIPGKALY DVGDIVHSVR AKWGIKANCP CSNRQFKLFS KPASKEDLKQ 720
TSLAGEKPTL GAVLQQNPSV LEPAAVGGEA ASKPAGSMKP ACPASTSPLN WLADLTSGNV 780
NKENKEKQPT MPILKNEIKC LPPLPPLSKS STVLHTFNST ILTPVSNNNS GFLRNLLNSS 840
TGKTENGLKN TPKILDDIFA SLVQNKTTSD LSKRPQGLTI KPSILGFDTP HYWLCDNRLL 900
CLQDPNNKSN WNVFRECWKQ GQPVMVSGVH HKLNSELWKP ESFRKEFGEQ EVDLVNCRTN 960
EIITGATVGD FWDGFEDVPN RLKNEKEPMV LKLKDWPPGE DFRDMMPSRF DDLMANIPLP 1020
EYTRRDGKLN LASRLPNYFV RPDLGPKMYN AYGLITPEDR KYGTTNLHLD VSDAANVMVY 1080
VGIPKGQCEQ EEEVLKTIQD GDSDELTIKR FIEGKEKPGA LWHIYAAKDT EKIREFLKKV 1140
SEEQGQENPA DHDPIHDQSW YLDRSLRKRL HQEYGVQGWA IVQFLGDVVF IPAGAPHQVH 1200
NLYSCIKVAE DFVSPEHVKH CFWLTQEFRY LSQTHTNHED KLQVKNVIYH AVKDAVAMLK 1260
ASESSFGKP 1269 
Gene Ontology
  
Interpro
 IPR003347; JmjC_dom. 
Pfam
 PF02373; JmjC 
SMART
 SM00558; JmjC 
PROSITE
 PS51184; JMJC 
PRINTS