CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-021894
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Pyruvate carboxylase 
Protein Synonyms/Alias
 Pyruvic carboxylase; PYC 
Gene Name
 pyc 
Gene Synonyms/Alias
 pycA; ylaP; BSU14860 
Created Date
 July 27, 2013 
Organism
 Bacillus subtilis (strain 168) 
NCBI Taxa ID
 224308 
Lysine Modification
Position
Peptide
Type
References
328QGHSLHSKKVNIPEQacetylation[1]
719KDMAGLLKPQAAYELacetylation[1]
Reference
 [1] The acetylproteome of Gram-positive model bacterium Bacillus subtilis.
 Kim D, Yu BJ, Kim JA, Lee YJ, Choi SG, Kang S, Pan JG.
 Proteomics. 2013 May;13(10-11):1726-36. [PMID: 23468065
Functional Description
 Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second, leading to oxaloacetate production. Fulfills an anaplerotic function in B.subtilis as it is necessary for growth on glucose, but is not required for sporulation. 
Sequence Annotation
 DOMAIN 1 457 Biotin carboxylation.
 DOMAIN 125 321 ATP-grasp.
 DOMAIN 534 802 Carboxyltransferase.
 DOMAIN 1078 1148 Biotinyl-binding.
 REGION 542 546 Substrate binding (By similarity).
 ACT_SITE 242 242 Potential.
 METAL 543 543 Divalent metal cation (By similarity).
 METAL 712 712 Divalent metal cation; via carbamate
 METAL 741 741 Divalent metal cation (By similarity).
 METAL 743 743 Divalent metal cation (By similarity).
 BINDING 121 121 ATP (By similarity).
 BINDING 205 205 ATP (By similarity).
 BINDING 240 240 ATP (By similarity).
 BINDING 615 615 Substrate (By similarity).
 BINDING 876 876 Substrate (By similarity).
 MOD_RES 712 712 N6-carboxylysine (By similarity).
 MOD_RES 1112 1112 N6-biotinyllysine (By similarity).  
Keyword
 ATP-binding; Biotin; Complete proteome; Ligase; Metal-binding; Multifunctional enzyme; Nucleotide-binding; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 1148 AA 
Protein Sequence
MSQQSIQKVL VANRGEIAIR IFRACTELNI RTVAVYSKED SGSYHRYKAD EAYLVGEGKK 60
PIDAYLDIEG IIDIAKRNKV DAIHPGYGFL SENIHFARRC EEEGIVFIGP KSEHLDMFGD 120
KVKAREQAEK AGIPVIPGSD GPAETLEAVE QFGQANGYPI IIKASLGGGG RGMRIVRSES 180
EVKEAYERAK SEAKAAFGND EVYVEKLIEN PKHIEVQVIG DKQGNVVHLF ERDCSVQRRH 240
QKVIEVAPSV SLSPELRDQI CEAAVALAKN VNYINAGTVE FLVANNEFYF IEVNPRVQVE 300
HTITEMITGV DIVQTQILVA QGHSLHSKKV NIPEQKDIFT IGYAIQSRVT TEDPQNDFMP 360
DTGKIMAYRS GGGFGVRLDT GNSFQGAVIT PYYDSLLVKL STWALTFEQA AAKMVRNLQE 420
FRIRGIKTNI PFLENVAKHE KFLTGQYDTS FIDTTPELFN FPKQKDRGTK MLTYIGNVTV 480
NGFPGIGKKE KPAFDKPLGV KVDVDQQPAR GTKQILDEKG AEGLANWVKE QKSVLLTDTT 540
FRDAHQSLLA TRIRSHDLKK IANPTAALWP ELFSMEMWGG ATFDVAYRFL KEDPWKRLED 600
LRKEVPNTLF QMLLRSSNAV GYTNYPDNVI KEFVKQSAQS GIDVFRIFDS LNWVKGMTLA 660
IDAVRDTGKV AEAAICYTGD ILDKNRTKYD LAYYTSMAKE LEAAGAHILG IKDMAGLLKP 720
QAAYELVSAL KETIDIPVHL HTHDTSGNGI YMYAKAVEAG VDIIDVAVSS MAGLTSQPSA 780
SGFYHAMEGN DRRPEMNVQG VELLSQYWES VRKYYSEFES GMKSPHTEIY EHEMPGGQYS 840
NLQQQAKGVG LGDRWNEVKE MYRRVNDMFG DIVKVTPSSK VVGDMALYMV QNNLTEKDVY 900
EKGESLDFPD SVVELFKGNI GQPHGGFPEK LQKLILKGQE PITVRPGELL EPVSFEAIKQ 960
EFKEQHNLEI SDQDAVAYAL YPKVFTDYVK TTESYGDISV LDTPTFFYGM TLGEEIEVEI 1020
ERGKTLIVKL ISIGEPQPDA TRVVYFELNG QPREVVIKDE SIKSSVQERL KADRTNPSHI 1080
AASMPGTVIK VLAEAGTKVN KGDHLMINEA MKMETTVQAP FSGTIKQVHV KNGEPIQTGD 1140
LLLEIEKA 1148 
Gene Ontology
 GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
 GO:0004075; F:biotin carboxylase activity; IEA:InterPro.
 GO:0003677; F:DNA binding; IEA:InterPro.
 GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
 GO:0004736; F:pyruvate carboxylase activity; IEA:EC.
 GO:0006094; P:gluconeogenesis; IEA:InterPro. 
Interpro
 IPR013785; Aldolase_TIM.
 IPR011761; ATP-grasp.
 IPR013815; ATP_grasp_subdomain_1.
 IPR013816; ATP_grasp_subdomain_2.
 IPR011764; Biotin_carboxylation_dom.
 IPR005482; Biotin_COase_C.
 IPR000089; Biotin_lipoyl.
 IPR005481; CarbamoylP_synth_lsu_N.
 IPR003379; Carboxylase_cons_dom.
 IPR005479; CbamoylP_synth_lsu-like_ATP-bd.
 IPR009057; Homeodomain-like.
 IPR016185; PreATP-grasp_dom.
 IPR000891; PYR_CT.
 IPR005930; Pyruv_COase.
 IPR011054; Rudment_hybrid_motif.
 IPR011053; Single_hybrid_motif. 
Pfam
 PF02785; Biotin_carb_C
 PF00364; Biotin_lipoyl
 PF00289; CPSase_L_chain
 PF02786; CPSase_L_D2
 PF00682; HMGL-like
 PF02436; PYC_OADA 
SMART
 SM00878; Biotin_carb_C 
PROSITE
 PS50975; ATP_GRASP
 PS50979; BC
 PS00188; BIOTIN
 PS50968; BIOTINYL_LIPOYL
 PS50989; COA_CT_CTER
 PS50980; COA_CT_NTER
 PS00866; CPSASE_1
 PS00867; CPSASE_2
 PS50991; PYR_CT 
PRINTS