CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-007365
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Homoisocitrate dehydrogenase, mitochondrial 
Protein Synonyms/Alias
 HIcDH 
Gene Name
 LYS12 
Gene Synonyms/Alias
 LYS10; LYS11; YIL094C; YI9910.02C 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
36IPGDGIGKEVIPAGKacetylation[1]
82ALPDETVKVLKEQCQacetylation[1]
127FANVRPVKSVEGEKGacetylation[1]
133VKSVEGEKGKPIDMVacetylation[1]
135SVEGEKGKPIDMVIVacetylation[1]
152NTEDLYIKIEKTYIDacetylation[1]
155DLYIKIEKTYIDKATacetylation[1]
160IEKTYIDKATGTRVAacetylation[1]
236KDKYGQIKYNEQIVDacetylation[1]
Reference
 [1] Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae.
 Henriksen P, Wagner SA, Weinert BT, Sharma S, Bacinskaja G, Rehman M, Juffer AH, Walther TC, Lisby M, Choudhary C.
 Mol Cell Proteomics. 2012 Nov;11(11):1510-22. [PMID: 22865919
Functional Description
 Catalyzes the NAD(+)-dependent conversion of homoisocitrate to alpha-ketoadipate. 
Sequence Annotation
 METAL 243 243 Magnesium or manganese (By similarity).
 METAL 267 267 Magnesium or manganese (By similarity).
 METAL 271 271 Magnesium or manganese (By similarity).
 BINDING 114 114 Substrate (By similarity).
 BINDING 124 124 Substrate (By similarity).
 BINDING 143 143 Substrate (By similarity).
 BINDING 243 243 Substrate (By similarity).
 MOD_RES 98 98 Phosphoserine.  
Keyword
 Amino-acid biosynthesis; Complete proteome; Direct protein sequencing; Lysine biosynthesis; Magnesium; Manganese; Metal-binding; Mitochondrion; NAD; Oxidoreductase; Phosphoprotein; Reference proteome; Transit peptide. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 371 AA 
Protein Sequence
MFRSVATRLS ACRGLASNAA RKSLTIGLIP GDGIGKEVIP AGKQVLENLN SKHGLSFNFI 60
DLYAGFQTFQ ETGKALPDET VKVLKEQCQG ALFGAVQSPT TKVEGYSSPI VALRREMGLF 120
ANVRPVKSVE GEKGKPIDMV IVRENTEDLY IKIEKTYIDK ATGTRVADAT KRISEIATRR 180
IATIALDIAL KRLQTRGQAT LTVTHKSNVL SQSDGLFREI CKEVYESNKD KYGQIKYNEQ 240
IVDSMVYRLF REPQCFDVIV APNLYGDILS DGAAALVGSL GVVPSANVGP EIVIGEPCHG 300
SAPDIAGKGI ANPIATIRST ALMLEFLGHN EAAQDIYKAV DANLREGSIK TPDLGGKAST 360
QQVVDDVLSR L 371 
Gene Ontology
 GO:0005739; C:mitochondrion; IDA:SGD.
 GO:0047046; F:homoisocitrate dehydrogenase activity; IDA:SGD.
 GO:0000287; F:magnesium ion binding; IEA:InterPro.
 GO:0051287; F:NAD binding; IEA:InterPro.
 GO:0009085; P:lysine biosynthetic process; IC:SGD.
 GO:0019878; P:lysine biosynthetic process via aminoadipic acid; IEA:UniProtKB-UniPathway. 
Interpro
 IPR019818; IsoCit/isopropylmalate_DH_CS.
 IPR001804; Isocitrate/isopropylmalate_DH.
 IPR024084; IsoPropMal-DH-like_dom. 
Pfam
 PF00180; Iso_dh 
SMART
  
PROSITE
 PS00470; IDH_IMDH 
PRINTS