CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-025954
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 Mediator of RNA polymerase II transcription subunit 23 
Protein Synonyms/Alias
  
Gene Name
 MED23 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
253ATLRFPLKGLLPYDKubiquitination[1]
260KGLLPYDKDLFEPQTubiquitination[1]
291CNMLGLNKQTLNIAQubiquitination[2]
679TRFLSDPKTVLSAESubiquitination[3]
Reference
 [1] hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties.
 Chen Z, Zhou Y, Song J, Zhang Z.
 Biochim Biophys Acta. 2013 Aug;1834(8):1461-7. [PMID: 23603789]
 [2] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [3] Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.
 Udeshi ND, Mani DR, Eisenhaure T, Mertins P, Jaffe JD, Clauser KR, Hacohen N, Carr SA.
 Mol Cell Proteomics. 2012 May;11(5):148-59. [PMID: 22505724
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 1374 AA 
Protein Sequence
METQLQSIFE EVVKTEVIEE AFPGMFMDTP EDEKTKLISC LGAFRQFWGG LSQESHEQCI 60
QWIVKFIHGQ HSPKRISFLY DCLAMAVETG LLPPRLVCES LINSDTLEWE RTQLWALTFK 120
LVRKIIGGVD YKGVRDLLKV ILEKILTIPN TVSSAVVQQL LAAREVIAYI LERNACLLPA 180
YFAVTEIRKL YPEGKLPHWL LGNLVSDFVD TFRPTARINS ICGRCSLLPV VNNSGAICNS 240
WKLDPATLRF PLKGLLPYDK DLFEPQTALL RYVLEQPYSR DMVCNMLGLN KQTLNIAQHK 300
QRCPVLEDQL VDLVVYAMER SETEEKFDDG GTSQLLWQHL SSQLIFFVLF QFASFPHMVL 360
SLHQKLAGRG LIKGRDHLMW VLLQFISGSI QKNALADFLP VMKLFDLLYP EKEYIPVPDI 420
NKPQSTHAFA MTCIWIHLNR KAQNDNSKLQ IPIPHSLRLH HEFLQQSLRN KSLQMNDYKI 480
ALLCNAYSTN SECFTLPMGA LVETIYGNGI MRIPLPGTNC MASGSITPLP MNLLDSLTVH 540
AKMSLIHSIA TRVIKLAHAK SSVALAPALV ETYSRLLVYM EIESLGIKGF ISQLLPTVFK 600
SHAWGILHTL LEMFSYRMHH IQPHYRVQLL SHLHTLAAVA QTNQNQLHLC VESTALRLIT 660
ALGSSEVQPQ FTRFLSDPKT VLSAESEELN RALILTLARA THVTDFFTGS DSIQGTWCKD 720
ILQTIMSFTP HNWASHTLSC FPGPLQAFFK QNNVPQESRF NLKKNVEEEY RKWKSMSNEN 780
DIITHFSMQG SPPLFLCLLW KMLLETDHIN QIGYRVLERI GARALVAHVR TFADFLVYEF 840
STSAGGQQLN KCIEILNDMV WKYNIVTLDR LILCLAMRSH EGNEAQVCYF IIQLLLLKPN 900
DFRNRVSDFV KENSPEHWLQ NDWHTKHMNY HKKYPEKLYF EGLAEQVDPP VQIQSPYLPI 960
YFGNVCLRFL PVFDIVIHRF LELLPVSKSL ETLLDHLGGL YKFHDRPVTY LYNTLHYYEM 1020
HLRDRAFLKR KLVHAIIGSL KDNRPQGWCL SDTYLKCAMN AREENPWVPD DTYYCRLIGR 1080
LVDTMAGKSP GPFPNCDWRF NEFPNPAAHA LHVTCVELMA LAVSGKEVGN ALLNVVLKSQ 1140
PLVPRENITA WMNAIGLIIT ALPEPYWIVL HDRIVSVISS PSLTSETEWV GYPFRLFDFT 1200
ACHQSYSEMS CSYTLALAHA VWHHSSIGQL SLIPKFLTEV LLPIVKTEFQ LLYVYHLVGP 1260
FLQRFQQERT RCMIEIGVAF YDMLLNVDQC STHLNYMDPI CDFLYHMKYM FTGDSVKEQV 1320
KKIICNLKPA LKLRLRFITH ISKMEPAAVP PQAMNSGSPA PQSNQVPVSL PVTQ 1374 
Gene Ontology
  
Interpro
 IPR021629; Mediator_Med23. 
Pfam
 PF11573; Med23 
SMART
  
PROSITE
  
PRINTS