CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-004087
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Uracil-DNA glycosylase 
Protein Synonyms/Alias
 UDG 
Gene Name
 UNG 
Gene Synonyms/Alias
 DGU; UNG1; UNG15 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
5***MIGQKTLYSFFSacetylation[1]
5***MIGQKTLYSFFSubiquitination[2, 3, 4, 5]
49DAAAIPAKKAPAGQEubiquitination[6]
78LDRIQRNKAAALLRLubiquitination[3, 4]
108HLSGEFGKPYFIKLMubiquitination[4]
295FGCRHFSKTNELLQKacetylation[1]
295FGCRHFSKTNELLQKubiquitination[6]
302KTNELLQKSGKKPIDubiquitination[6]
Reference
 [1] Lysine acetylation targets protein complexes and co-regulates major cellular functions.
 Choudhary C, Kumar C, Gnad F, Nielsen ML, Rehman M, Walther TC, Olsen JV, Mann M.
 Science. 2009 Aug 14;325(5942):834-40. [PMID: 19608861]
 [2] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [3] Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.
 Udeshi ND, Mani DR, Eisenhaure T, Mertins P, Jaffe JD, Clauser KR, Hacohen N, Carr SA.
 Mol Cell Proteomics. 2012 May;11(5):148-59. [PMID: 22505724]
 [4] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [5] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302]
 [6] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983
Functional Description
 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. 
Sequence Annotation
 REGION 1 25 FAM72A-binding.
 ACT_SITE 154 154 Proton acceptor (By similarity).
 MOD_RES 12 12 Phosphoserine.
 MOD_RES 14 14 Phosphoserine.
 MOD_RES 23 23 Phosphoserine.
 MOD_RES 60 60 Phosphothreonine.
 MOD_RES 64 64 Phosphoserine.
 MOD_RES 295 295 N6-acetyllysine.  
Keyword
 3D-structure; Acetylation; Alternative splicing; Complete proteome; Direct protein sequencing; Disease mutation; DNA damage; DNA repair; Glycosidase; Host-virus interaction; Hydrolase; Mitochondrion; Nucleus; Phosphoprotein; Polymorphism; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 313 AA 
Protein Sequence
MIGQKTLYSF FSPSPARKRH APSPEPAVQG TGVAGVPEES GDAAAIPAKK APAGQEEPGT 60
PPSSPLSAEQ LDRIQRNKAA ALLRLAARNV PVGFGESWKK HLSGEFGKPY FIKLMGFVAE 120
ERKHYTVYPP PHQVFTWTQM CDIKDVKVVI LGQDPYHGPN QAHGLCFSVQ RPVPPPPSLE 180
NIYKELSTDI EDFVHPGHGD LSGWAKQGVL LLNAVLTVRA HQANSHKERG WEQFTDAVVS 240
WLNQNSNGLV FLLWGSYAQK KGSAIDRKRH HVLQTAHPSP LSVYRGFFGC RHFSKTNELL 300
QKSGKKPIDW KEL 313 
Gene Ontology
 GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
 GO:0005634; C:nucleus; NAS:UniProtKB.
 GO:0004844; F:uracil DNA N-glycosylase activity; NAS:UniProtKB.
 GO:0006284; P:base-excision repair; TAS:ProtInc.
 GO:0016446; P:somatic hypermutation of immunoglobulin genes; IEA:Compara.
 GO:0016447; P:somatic recombination of immunoglobulin gene segments; IEA:Compara.
 GO:0019048; P:virus-host interaction; IEA:UniProtKB-KW. 
Interpro
 IPR018085; Ura-DNA_Glyclase_AS.
 IPR002043; Ura_DNA_glycsylse.
 IPR005122; Uracil-DNA_glycosylase-like. 
Pfam
 PF03167; UDG 
SMART
 SM00986; UDG 
PROSITE
 PS00130; U_DNA_GLYCOSYLASE 
PRINTS