CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-023789
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Rab GTPase-activating protein 1 
Protein Synonyms/Alias
 GAP and centrosome-associated protein; Rab6 GTPase-activating protein GAPCenA 
Gene Name
 RABGAP1 
Gene Synonyms/Alias
 HSPC094 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
455TTENFFLKLKQIKQRubiquitination[1]
598KYRILITKESPQDSAubiquitination[1]
1066TATGVQGKETC****ubiquitination[1]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961
Functional Description
 May act as a GTPase-activating protein of RAB6A. May play a role in microtubule nucleation by centrosome. May participate in a RAB6A-mediated pathway involved in the metaphase- anaphase transition. 
Sequence Annotation
 DOMAIN 142 298 PID.
 DOMAIN 566 752 Rab-GAP TBC.
 MOD_RES 996 996 Phosphothreonine.  
Keyword
 Alternative splicing; Cell cycle; Coiled coil; Complete proteome; Cytoplasm; Cytoskeleton; GTPase activation; Phosphoprotein; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 1069 AA 
Protein Sequence
MDDKASVGKI SVSSDSVSTL NSEDFVLVSR QGDETPSTNN GSDDEKTGLK IVGNGSEQQL 60
QKELADVLMD PPMDDQPGEK ELVKRSQLDG EGDGPLSNQL SASSTINPVP LVGLQKPEMS 120
LPVKPGQGDS EASSPFTPVA DEDSVVFSKL TYLGCASVNA PRSEVEALRM MSILRSQCQI 180
SLDVTLSVPN VSEGIVRLLD PQTNTEIANY PIYKILFCVR GHDGTPESDC FAFTESHYNA 240
ELFRIHVFRC EIQEAVSRIL YSFATAFRRS AKQTPLSATA APQTPDSDIF TFSVSLEIKE 300
DDGKGYFSAV PKDKDRQCFK LRQGIDKKIV IYVQQTTNKE LAIERCFGLL LSPGKDVRNS 360
DMHLLDLESM GKSSDGKSYV ITGSWNPKSP HFQVVNEETP KDKVLFMTTA VDLVITEVQE 420
PVRFLLETKV RVCSPNERLF WPFSKRSTTE NFFLKLKQIK QRERKNNTDT LYEVVCLESE 480
SERERRKTTA SPSVRLPQSG SQSSVIPSPP EDDEEEDNDE PLLSGSGDVS KECAEKILET 540
WGELLSKWHL NLNVRPKQLS SLVRNGVPEA LRGEVWQLLA GCHNNDHLVE KYRILITKES 600
PQDSAITRDI NRTFPAHDYF KDTGGDGQDS LYKICKAYSV YDEEIGYCQG QSFLAAVLLL 660
HMPEEQAFSV LVKIMFDYGL RELFKQNFED LHCKFYQLER LMQEYIPDLY NHFLDISLEA 720
HMYASQWFLT LFTAKFPLYM VFHIIDLLLC EGISVIFNVA LGLLKTSKDD LLLTDFEGAL 780
KFFRVQLPKR YRSEENAKKL MELACNMKIS QKKLKKYEKE YHTMREQQAQ QEDPIERFER 840
ENRRLQEANM RLEQENDDLA HELVTSKIAL RKDLDNAEEK ADALNKELLM TKQKLIDAEE 900
EKRRLEEESA QLKEMCRREL DKAESEIKKN SSIIGDYKQI CSQLSERLEK QQTANKVEIE 960
KIRQKVDDCE RCREFFNKEG RVKGISSTKE VLDEDTDEEK ETLKNQLREM ELELAQTKLQ 1020
LVEAECKIQD LEHHLGLALN EVQAAKKTWF NRTLSSIKTA TGVQGKETC 1069 
Gene Ontology
 GO:0005813; C:centrosome; TAS:ProtInc.
 GO:0005829; C:cytosol; TAS:ProtInc.
 GO:0005875; C:microtubule associated complex; TAS:ProtInc.
 GO:0003677; F:DNA binding; IEA:InterPro.
 GO:0005096; F:GTPase activator activity; TAS:ProtInc.
 GO:0005097; F:Rab GTPase activator activity; IEA:InterPro.
 GO:0015631; F:tubulin binding; TAS:ProtInc.
 GO:0007049; P:cell cycle; TAS:ProtInc.
 GO:0032851; P:positive regulation of Rab GTPase activity; IEA:GOC. 
Interpro
 IPR009057; Homeodomain-like.
 IPR022164; Kinesin-like.
 IPR011993; PH_like_dom.
 IPR006020; PTyr_interaction_dom.
 IPR000195; Rab-GTPase-TBC_dom. 
Pfam
 PF12473; DUF3694
 PF00640; PID
 PF00566; RabGAP-TBC 
SMART
 SM00462; PTB
 SM00164; TBC 
PROSITE
 PS01179; PID
 PS50086; TBC_RABGAP 
PRINTS