CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-010816
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 DNA-directed RNA polymerase I subunit RPA49 
Protein Synonyms/Alias
 A49; DNA-directed RNA polymerase I 49 kDa polypeptide 
Gene Name
 RPA49 
Gene Synonyms/Alias
 RRN13; YNL248C; N0880 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
92KKSIQLYKAPVLVSKacetylation[1]
99KAPVLVSKVVSKSSKacetylation[1]
170DSVRTASKDLPTRAQacetylation[1]
241FPYQNNSKYVAKKLDacetylation[1]
Reference
 [1] Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae.
 Henriksen P, Wagner SA, Weinert BT, Sharma S, Bacinskaja G, Rehman M, Juffer AH, Walther TC, Lisby M, Choudhary C.
 Mol Cell Proteomics. 2012 Nov;11(11):1510-22. [PMID: 22865919
Functional Description
 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase I which synthesizes ribosomal RNA precursors. 
Sequence Annotation
 MOD_RES 34 34 Phosphoserine.
 MOD_RES 151 151 Phosphoserine.  
Keyword
 3D-structure; Complete proteome; DNA-directed RNA polymerase; Nucleotidyltransferase; Nucleus; Phosphoprotein; Reference proteome; Transcription; Transferase. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 415 AA 
Protein Sequence
MSVKRSVSEI EIESVQDQPS VAVGSFFKGF RAPSDTTFDL YKKKKSEKDE FVLHGENERL 60
EYEGYTDSSS QASNQYVVGL FNPEKKSIQL YKAPVLVSKV VSKSSKNLRG PKIKSKSDTR 120
PSALRNALGE AFGTKKAKKA IADLERNRID SDKLTDSAID IVDSVRTASK DLPTRAQLDE 180
ITSNDRPTPL ANIDATDVEQ IYPIESIIPK KELQFIRVSS ILKEADKEKK LELFPYQNNS 240
KYVAKKLDSL TQPSQMTKLQ LLYYLSLLLG VYENRRVNNK TKLLERLNSP PEILVDGILS 300
RFTVIKPGQF GRSKDRSYFI DPQNEDKILC YILAIIMHLD NFIVEITPLA HELNLKPSKV 360
VSLFRVLGAI VKGATVAQAE AFGIPKSTAA SYKIATMKVP FKLPEMTRRG RGPRR 415 
Gene Ontology
 GO:0005736; C:DNA-directed RNA polymerase I complex; IDA:SGD.
 GO:0003677; F:DNA binding; IEA:InterPro.
 GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
 GO:0008361; P:regulation of cell size; IMP:SGD.
 GO:0006362; P:transcription elongation from RNA polymerase I promoter; IDA:SGD.
 GO:0042790; P:transcription of nuclear large rRNA transcript from RNA polymerase I promoter; IMP:SGD. 
Interpro
 IPR009668; RNA_pol-assoc_fac_A49-like. 
Pfam
 PF06870; RNA_pol_I_A49 
SMART
  
PROSITE
  
PRINTS