CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-040621
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 
Protein Synonyms/Alias
  
Gene Name
 SMARCD1 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
30DATKQKRKFSSFFKSubiquitination[1]
71ETDGFQVKRPGDVNVubiquitination[1, 2, 3]
139REFVICDKYLQQIFEubiquitination[1, 3, 4]
151IFESQRMKFSEIPQRubiquitination[1, 3]
183SVDPNDQKKTACYDIubiquitination[1]
184VDPNDQKKTACYDIDubiquitination[1, 2]
233IETINQLKTQREFMLubiquitination[1, 2, 3]
262QSQCRDLKTMTDVVGubiquitination[1, 2, 3, 5]
296VCRYFYSKVQQRRQEubiquitination[1, 5]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [2] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [3] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302]
 [4] Global identification of modular cullin-RING ligase substrates.
 Emanuele MJ, Elia AE, Xu Q, Thoma CR, Izhar L, Leng Y, Guo A, Chen YN, Rush J, Hsu PW, Yen HC, Elledge SJ.
 Cell. 2011 Oct 14;147(2):459-74. [PMID: 21963094]
 [5] Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.
 Udeshi ND, Mani DR, Eisenhaure T, Mertins P, Jaffe JD, Clauser KR, Hacohen N, Carr SA.
 Mol Cell Proteomics. 2012 May;11(5):148-59. [PMID: 22505724
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 313 AA 
Protein Sequence
MCNGLLNLPH FPWANEMALS KYDATKQKRK FSSFFKSLVI ELDKDLYGPD NHLVEWHRTA 60
TTQETDGFQV KRPGDVNVRC TVLLMLDYQP PQFKLDPRLA RLLGIHTQTR PVIIQALWQY 120
IKTHKLQDPH EREFVICDKY LQQIFESQRM KFSEIPQRLH ALLMPPEPII INHVISVDPN 180
DQKKTACYDI DVEVDDTLKT QMNSFLLSTA SQQEIATLDN KIHETIETIN QLKTQREFML 240
SFARDPQGFI NDWLQSQCRD LKTMTDVVGN PEEERRAEFY FQPWAQEAVC RYFYSKVQQR 300
RQELEQALGI RNT 313 
Gene Ontology
  
Interpro
 IPR019835; SWIB_domain.
 IPR003121; SWIB_MDM2_domain. 
Pfam
 PF02201; SWIB 
SMART
 SM00151; SWIB 
PROSITE
  
PRINTS