CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-028848
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 Semaphorin-6D 
Protein Synonyms/Alias
  
Gene Name
 Sema6d 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
732QQNIDSPKLYSNLLTubiquitination[1]
Reference
 [1] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023] 
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Disulfide bond; Membrane; Reference proteome; Transmembrane; Transmembrane helix. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 1069 AA 
Protein Sequence
MGFLLLWFCV LFLLVSRLRA VSFPEDDEPL NTVDYHYSRQ YPVFRGRPSG NESQHRLDFQ 60
LMLKIRDTLY IAGRDQVYTV NLNEIPQTEV IPSKKLTWRS RQQDRENCAM KGKHKDECHN 120
FIKVFVPRND EMVFVCGTNA FNPMCRYYRL RTLEYDGEEI SGLARCPFDA RQTNVALFAD 180
GKLYSATVAD FLASDAVIYR SMGDGSALRT IKYDSKWIKE PHFLHAIEYG NYVYFFFREI 240
AVEHNNLGKA VYSRVARICK NDMGGSQRVL EKHWTSFLKA RLNCSVPGDS FFYFDVLQSI 300
TDIIQINGIP TVVGVFTTQL NSIPGSAVCA FSMDDIEKVF KGRFKEQKTP DSVWTAVPED 360
KVPKPRPGCC AKHGLAEAYK TSIDFPDDTL AFIKSHPLMD SAVPPIADEP WFTKTRVRYR 420
LTAIEVDRSA GPYQNYTVIF VGSEAGVVLK VLAKTSPFSL NDSVLLEEIE AYNPAKCSAE 480
SEEDRKVVSL QLDKDHHALY VAFSSCVVRI PLSRCERYGS CKKSCIASRD PYCGWLSQGV 540
CERVTLGMLP GGYEQDTEYG NTAHLGDCHE SLPPSTTPDY KIFGGPTSDM EVSSSSVTTV 600
ASSPEITSKV IDTWRPKLTS SRKFVVQDDP NTSDFTDTIS GVRWEVQSGE SNQMVHMNVL 660
ITCVFAAFVL GAFIAGVAVY CYRDMFVRKN RKIHKDAESA QSCTDSSGSF AKLNGLFDSP 720
VKEYQQNIDS PKLYSNLLTS RKELPPNTDT KSMAVDHRGQ PPELAALPTP ESTPVLHQKT 780
LQAMKSHSEK AHSHGASRKE HPQFFPSSPP PHSPLSHGHI PSAIVLPNAT HDYNTSFSNS 840
NAHKAEKKLQ SMDHPLTKSS SKREHRRSVD SRNTLNDLLK HLNDPNSNPK AILGEIHMAH 900
QTLMLDPVGP MAEVPPKVPN REASLYSPPS TLPRNSPTKR VDVPTTPGVP MTSLERQRGY 960
HKNSSQRHSI SAVPKNLNSP NGVLLSRQPS MNRGGYMPTP TGAKVDYIQG TPVSVHLQPS 1020
LSRQSSYTSN GTLPRTGLKR TPSLKPDVPP KPSFVPQTTS VRPLNKYTY 1069 
Gene Ontology
 GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
 GO:0004872; F:receptor activity; IEA:InterPro.
 GO:0014912; P:negative regulation of smooth muscle cell migration; IDA:MGI.
 GO:0014911; P:positive regulation of smooth muscle cell migration; IDA:MGI.
 GO:0021591; P:ventricular system development; IDA:MGI. 
Interpro
 IPR003659; Plexin-like.
 IPR016201; Plexin-like_fold.
 IPR002165; Plexin_repeat.
 IPR027231; Semaphorin.
 IPR001627; Semaphorin/CD100_Ag.
 IPR015943; WD40/YVTN_repeat-like_dom. 
Pfam
 PF01437; PSI
 PF01403; Sema 
SMART
 SM00423; PSI
 SM00630; Sema 
PROSITE
 PS51004; SEMA 
PRINTS