CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-029514
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Syntaxin 4A (Placental), isoform CRA_c 
Protein Synonyms/Alias
 Syntaxin-4; cDNA FLJ34514 fis, clone HLUNG2006599, highly similar to Syntaxin-4 
Gene Name
 STX4 
Gene Synonyms/Alias
 STX4A; hCG_21149 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
56TIVKLGNKVQELEKQubiquitination[1, 2]
89QNLRDEIKQLGREIRubiquitination[3]
100REIRLQLKAIEPQKEubiquitination[1, 2]
106LKAIEPQKEEADENYubiquitination[1, 2, 4, 5]
241EMINRIEKNILSSADubiquitination[3]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [2] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302]
 [3] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [4] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [5] Global identification of modular cullin-RING ligase substrates.
 Emanuele MJ, Elia AE, Xu Q, Thoma CR, Izhar L, Leng Y, Guo A, Chen YN, Rush J, Hsu PW, Yen HC, Elledge SJ.
 Cell. 2011 Oct 14;147(2):459-74. [PMID: 21963094
Functional Description
  
Sequence Annotation
  
Keyword
 Coiled coil; Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 295 AA 
Protein Sequence
MGMTARTKRT RSGSRWWCTR ARHGWGARTR SSSTSPLGHP PQVRTIRQTI VKLGNKVQEL 60
EKQQVTILAT PLPEESMKQE LQNLRDEIKQ LGREIRLQLK AIEPQKEEAD ENYNSVNTRM 120
RKTQHGVLSQ QFVELINKCN SMQSEYREKN VERIRRQLKI TNAGMVSDEE LEQMLDSGQS 180
EVFVSNILKD TQVTRQALNE ISARHSEIQQ LERSIRELHD IFTFLATEVE MQGEMINRIE 240
KNILSSADYV ERGQEHVKTA LENQKKARKK KVLIAICVSI TVVLLAVIIG VTVVG 295 
Gene Ontology
 GO:0016020; C:membrane; IEA:InterPro.
 GO:0006886; P:intracellular protein transport; IEA:InterPro.
 GO:0016192; P:vesicle-mediated transport; IEA:InterPro. 
Interpro
 IPR006012; Syntaxin/epimorphin_CS.
 IPR006011; Syntaxin_N.
 IPR010989; t-SNARE.
 IPR000727; T_SNARE_dom. 
Pfam
 PF05739; SNARE
 PF00804; Syntaxin 
SMART
 SM00503; SynN
 SM00397; t_SNARE 
PROSITE
 PS00914; SYNTAXIN
 PS50192; T_SNARE 
PRINTS