CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-035691
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 Protein Srbd1 
Protein Synonyms/Alias
  
Gene Name
 Srbd1 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Rattus norvegicus (Rat) 
NCBI Taxa ID
 10116 
Lysine Modification
Position
Peptide
Type
References
664DPLAELVKFDPKHIGacetylation[1]
Reference
 [1] Proteomic analysis of lysine acetylation sites in rat tissues reveals organ specificity and subcellular patterns.
 Lundby A, Lage K, Weinert BT, Bekker-Jensen DB, Secher A, Skovgaard T, Kelstrup CD, Dmytriyev A, Choudhary C, Lundby C, Olsen JV.
 Cell Rep. 2012 Aug 30;2(2):419-31. [PMID: 22902405] 
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 980 AA 
Protein Sequence
MPSLRKRTKI QTENAEPRDE CSSFSELSSG SEEDNKEDSI WEPQKKVLRN RRRPASKGSK 60
RKQGPRVKKS AQQVHDISKD VAVKEELNSP VAIVNANLEE ENQKLHTTNT LKTAAKKQKN 120
AGHGAKKRLK VDEETNQASP FEGGESNVEA PSTSEDRDMC KKESEDSFTF EQSPLKRIKT 180
ESCPQGRPAR VPGASDIKEE VEMNWDIVQV LSERTNIEPW ICANIIRLFN DDNTIPFIVR 240
YRKELINNLD ADFLREVRQT LDELRDVAKK VHSRIQKIKK EGKMSECLLQ ALLNCKTFEE 300
LEHVSAPYKM GSKGTKAQRA KQLGLEGAAW TLLENPGQLN LPSYIRPDVK GLSELKDIET 360
GVQHILADMI AKDKDTLDFI RDLCKHRYIC IQSSLAKVSS KKVNEKEVDK FQLYQNFSCN 420
IRNIHHHQIL AINRGENLKI LTVKVNISDG VKNEFCRWCI QNRWRPRGFA RPELMKILHN 480
SLDDSFKRLI VPLLCRELRA KLTSDAEKQS VMMFGQNLRQ LLLTSPVPGR TLMGVDPGYK 540
HGCKLAIISP TSQILHTDVV YLHCGQGFRE AEKIKRLLLN FNCNTVVIGN GTACRETEAY 600
FADLIMKNYF APLDVVYCIV SEAGASIYSV SPEANKEMPG LDPNLRSAVS IARRVQDPLA 660
ELVKFDPKHI GVGMYQHDVS QTLLKATLDS VVEECVSFVG VDINICSEVL LRHIAGLNAN 720
RAKNIIEWRE KNGPFINREQ LKKVKGLGPK SFQQCAGFVR VNQDYIRTFC SGQHTDSSGQ 780
SQEAAMVTKE KPGKKKNKAD VALTPNPLDE TCIHPESYDI AVRFLSFIGG TLYEIGKPEM 840
QQKINSSLGK EGIEKTAERL QTTAHTLQVI IDGLSQPKTF DIRTDFDKPD FKRSIVCLAD 900
LQVGTILTGK VENATLFGVF VDIGVGKAGL IPIRFITEAK LSKTKKRRSL GLGPGEKVEV 960
KVLSVDIPRS RISLDLLRVL 980 
Gene Ontology
 GO:0016788; F:hydrolase activity, acting on ester bonds; IEA:InterPro.
 GO:0003723; F:RNA binding; IEA:InterPro.
 GO:0006139; P:nucleobase-containing compound metabolic process; IEA:InterPro. 
Interpro
 IPR012340; NA-bd_OB-fold.
 IPR003029; Rbsml_prot_S1_RNA-bd_dom.
 IPR022967; RNA-binding_domain_S1.
 IPR023323; Tex-like_dom.
 IPR023319; Tex-like_HTH_dom.
 IPR018974; Tex-like_N.
 IPR023097; Tex_RuvX-like_dom.
 IPR006641; YqgF/RNaseH-like_dom. 
Pfam
 PF00575; S1
 PF09371; Tex_N 
SMART
 SM00316; S1
 SM00732; YqgFc 
PROSITE
 PS50126; S1 
PRINTS