CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-042906
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 ATP-dependent RNA helicase DDX54 
Protein Synonyms/Alias
  
Gene Name
 DDX54 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
11PESIKRAKEMDLVGLubiquitination[1]
43LRLVDSIKNYRSRADubiquitination[1, 2]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [2] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 160 AA 
Protein Sequence
XPSPESIKRA KEMDLVGLGL HPLFSSRFEE EELQRLRLVD SIKNYRSRAD IFSEVVGRKR 60
QRSGPNRGAK RRREEARQRD QEFYIPYRPK DFDSERGLSI SGEGGAFEQQ AAGAVLDLMG 120
DEAQNLTRGR QQLKWDRKKK RFVGQSGQED KKKIKTESGR 160 
Gene Ontology
 GO:0005634; C:nucleus; IEA:InterPro.
 GO:0005524; F:ATP binding; IEA:InterPro.
 GO:0016818; F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; IEA:InterPro.
 GO:0003723; F:RNA binding; IEA:InterPro. 
Interpro
 IPR012541; DBP10CT. 
Pfam
 PF08147; DBP10CT 
SMART
  
PROSITE
  
PRINTS